Evidence map›Paper›PMID 35804506›Full record

ArticleAnimals : an open access journal from MDPI2022

Genomic Survey and Microsatellite Marker Investigation of Patagonian Moray Cod (

Eunkyung Choi, Seung Jae Lee, Euna Jo, Jinmu Kim, Steven J Parker, Jeong-Hoon Kim, Hyun Park

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. A Whole-Genome Survey and the Mitochondrial Genome ofAnimals : an open access journal from MDPI · 2024
    Article
  3. Genome Survey of MaleAnimals : an open access journal from MDPI · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Eunkyung ChoiDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.ORCID 0000-0003-4823-2532
Seung Jae LeeDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.ORCID 0000-0002-2404-3107
Euna JoDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.ORCID 0000-0003-2666-6743
Jinmu KimDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.ORCID 0000-0003-4045-7227
Steven J ParkerCommission for the Conservation of Antarctic Marine Living Resources (CCAMLR), Hobart, TAS 7000, Australia.
Jeong-Hoon KimKorea Polar Research Institute (KOPRI), Incheon 21990, Korea.ORCID 0000-0002-2397-2668
Hyun ParkDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.ORCID 0000-0002-8055-2010
Korea University · KR

Funding

Korea University 2022Ministry of Oceans and Fisheries PM21060
6 · The paper itself

Abstract

The Muraenolepididae family of fishes, known as eel cods, inhabits continental slopes and shelves in the Southern Hemisphere. This family belongs to the Gadiformes order, which constitutes one of the most important commercial fish resources worldwide, but the classification of the fish species in this order is ambiguous because it is only based on the morphological and habitat characteristics of the fishes. Here, the genome of Patagonian moray cod was sequenced using the Illumina HiSeq platform, and screened for microsatellite motifs. The genome was predicted to be 748.97 Mb, with a heterozygosity rate of 0.768%, via K-mer analysis (K = 25). The genome assembly showed that the total size of scaffolds was 711.92 Mb and the N50 scaffold length was 1522 bp. Additionally, 4,447,517 microsatellite motifs were identified from the genome survey assembly, and the most abundant motif type was found to be AC/GT. In summary, these data may facilitate the identification of molecular markers in Patagonian moray cod, which would be a good basis for further whole-genome sequencing with long read sequencing technology and chromosome conformation capture technology, as well as population genetics.

Indexed as

IlluminamicrosatelliteMuraenolepis orangiensisPatagonian moray codSSR

Identifiers

PMID35804506
PMCPMC9265078
OpenAlexW4283324369

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.