Evidence map›Paper›PMID 35803954›Full record

ArticleNature communications2022

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children.

Eran Mick, Alexandra Tsitsiklis, Natasha Spottiswoode, Saharai Caldera, Paula Hayakawa Serpa, Angela M Detweiler, Norma Neff, Angela Oliveira Pisco, Lucy M Li, Hanna Retallack and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
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  5. Review
  6. Article
  7. Article
  8. Review
  9. Host-Microbe Multiomic Profiling Reveals Age-Dependent COVID-19 Immunopathology.medRxiv : the preprint server for health sciences · 2024
    Article
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  11. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 1 country.

Eran Mick *Division of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0002-7299-808X
Alexandra Tsitsiklis *Division of Infectious Diseases, University of California, San Francisco, CA, USA.ORCID 0000-0003-3467-1171
Natasha SpottiswoodeDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Saharai CalderaDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Paula Hayakawa SerpaDivision of Infectious Diseases, University of California, San Francisco, CA, USA.
Angela M DetweilerChan Zuckerberg Biohub, San Francisco, CA, USA.
Norma NeffChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-7141-5420
Angela Oliveira PiscoChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-0142-2355
Lucy M LiChan Zuckerberg Biohub, San Francisco, CA, USA.
Hanna RetallackDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Kalani RatnasiriChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0001-5953-0004
Kayla M WilliamsonDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Victoria SoesantoDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Eric A F SimõesDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Christiana SmithDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Lisa AbuogiDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Amy KistlerChan Zuckerberg Biohub, San Francisco, CA, USA.
Brandie D WagnerDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Aurora, CO, USA.
Joseph L DeRisiChan Zuckerberg Biohub, San Francisco, CA, USA.
Lilliam AmbroggioDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Peter M MouraniDepartment of Pediatrics, University of Colorado and Children's Hospital Colorado, Aurora, CO, USA.
Charles R LangelierDivision of Infectious Diseases, University of California, San Francisco, CA, USA. chaz.langelier@ucsf.edu.ORCID 0000-0002-6708-4646
University of California, San Francisco · USChan Zuckerberg Initiative (United States) · USChildren's Hospital Colorado · USColorado School of Public Health · USArkansas Children's Hospital · US

Funding

Medical Scientist Training Program (T32 NRSA Training Grant)T32GM141323 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aimee Kao · 2021 to 2026
$10.5M
BIOLOGY OF INFECTIOUS DISEASES TRAINING PROGRAMT32AI007641 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW G DORSEY · 2000 to 2026
$6.9M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Integrated Host/Microbe Metagenomics to Improve Lower Respiratory Tract Infection Diagnosis in Critically Ill ChildrenR01HL155418 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANGELIER, CHARLES · 2021 to 2024
$1.6M
Profiling the Lung Transcriptome for Precision Diagnosis of Respiratory Infections using Host/Pathogen Metagenomic SequencingK23HL138461 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANGELIER, CHARLES · 2018 to 2021
$718k
NHLBI NIH HHS K23 HL138461NHLBI NIH HHS R01 HL155418NIAID NIH HHS T32 AI007641NIAID NIH HHS T32 AI060537NIGMS NIH HHS T32 GM141323
6 · The paper itself

Abstract

Unlike other respiratory viruses, SARS-CoV-2 disproportionately causes severe disease in older adults whereas disease burden in children is lower. To investigate whether differences in the upper airway immune response may contribute to this disparity, we compare nasopharyngeal gene expression in 83 children (<19-years-old; 38 with SARS-CoV-2, 11 with other respiratory viruses, 34 with no virus) and 154 older adults (>40-years-old; 45 with SARS-CoV-2, 28 with other respiratory viruses, 81 with no virus). Expression of interferon-stimulated genes is robustly activated in both children and adults with SARS-CoV-2 infection compared to the respective non-viral groups, with only subtle distinctions. Children, however, demonstrate markedly greater upregulation of pathways related to B cell and T cell activation and proinflammatory cytokine signaling, including response to TNF and production of IFNγ, IL-2 and IL-4. Cell type deconvolution confirms greater recruitment of B cells, and to a lesser degree macrophages, to the upper airway of children. Only children exhibit a decrease in proportions of ciliated cells, among the primary targets of SARS-CoV-2, upon infection. These findings demonstrate that children elicit a more robust innate and especially adaptive immune response to SARS-CoV-2 in the upper airway that likely contributes to their protection from severe disease in the lower airway.

Indexed as

COVID-19SARS-CoV-2Adaptive ImmunityAdultAgedChildGene ExpressionHumansNasopharynxYoung Adult

Identifiers

PMID35803954
PMCPMC9263813
OpenAlexW4284895101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.