Evidence map›Paper›PMID 35803582›Full record

ArticleACS nano2022

Dynamic Heterochromatin States in Anisotropic Nuclei of Cells on Aligned Nanofibers.

Wenjie Liu, Abinash Padhi, Xiaohui Zhang, Jairaj Narendran, Mark A Anastasio, Amrinder S Nain, Joseph Irudayaraj

Open access · greenAbstract read
In one paragraph

Article in ACS nano, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Material-Induced Nuclear Deformation Controls Chromatin Architecture in Adipose Stem Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. A nuclear basis for mechanointelligence in cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Mechanomemory in protein diffusivity of chromatin and nucleoplasm after force cessation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wenjie LiuDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1102 Everitt Lab, 1406 W. Green Street, Urbana, Illinois 61801, United States.
Abinash PadhiDepartment of Mechanical Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.
Xiaohui ZhangDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1102 Everitt Lab, 1406 W. Green Street, Urbana, Illinois 61801, United States.
Jairaj NarendranDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1102 Everitt Lab, 1406 W. Green Street, Urbana, Illinois 61801, United States.
Mark A AnastasioDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1102 Everitt Lab, 1406 W. Green Street, Urbana, Illinois 61801, United States.
Amrinder S NainDepartment of Mechanical Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0002-9757-2341
Joseph IrudayarajDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1102 Everitt Lab, 1406 W. Green Street, Urbana, Illinois 61801, United States.ORCID 0000-0002-0630-1520
University of Illinois Urbana-Champaign · USVirginia Tech · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cancer cell nucleus deforms as it invades the interstitial spaces in tissues and the tumor microenvironment. While alteration of the chromatin structure in a deformed nucleus is expected and documented, the chromatin structure in the nuclei of cells on aligned matrices has not been elucidated. In this work we elucidate the spatiotemporal organization of heterochromatin in the elongated nuclei of cells on aligned nanofibers with stimulated emission depletion nanoscopy and fluorescence correlation spectroscopy. We show that the anisotropy of nuclei is sufficient to drive H3K9me3-heterochromatin alterations, with enhanced H3K9me3 nanocluster compaction and aggregation states that otherwise are indistinguishable from diffraction-limited microscopy. We interrogated the higher-order heterochromatin structures within major chromatin compartments in anisotropic nuclei and discovered a wider spatial dispersion of nanodomain clusters in the nucleoplasm and condensed larger nanoclusters near the periphery and pericentromeric heterochromatin. Upon examining the spatiotemporal dynamics of heterochromatin in anisotropic nuclei, we observed reduced mobility of the constitutive heterochromatin mark H3K9me3 and the associated heterochromatin protein 1 (HP1α) at the nucleoplasm and periphery regions, correlating with increased viscosity and changes in gene expression. Since heterochromatin remodeling is crucial to genome integrity, our results reveal an unconventional H3K9me3 heterochromatin distribution, providing cues to an altered chromatin state due to perturbations of the nuclei in aligned fiber configurations.

Indexed as

HeterochromatinNanofibersAnisotropyCell NucleusChromatinChromobox Protein Homolog 5HistonesChromatinChromobox Protein Homolog 5HeterochromatinHistonesanisotropic nucleifluorescence correlation spectroscopyH3K9me3heterochromatinnanofiberssuper-resolution microscopy

Identifiers

PMID35803582
PMCPMC9332347
OpenAlexW4284994792

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.