Evidence map›Paper›PMID 35802653›Full record

ArticlePloS one2022

Multilocus Sequence Typing helps understand the genetic diversity of Cryptosporidium hominis and Cryptosporidium parvum isolated from Colombian patients.

Johanna Uran-Velasquez, Juan F Alzate, Ana E Farfan-Garcia, Oscar G Gomez-Duarte, Larry L Martinez-Rosado, Diego D Dominguez-Hernandez, Winston Rojas, Ana Luz Galvan-Diaz, Gisela M Garcia-Montoya

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. A review of recentCurrent research in parasitology & vector-borne diseases · 2025
    Review
  3. Current research in parasitology & vector-borne diseases · 2025
    Article
  4. Molecular analysis of cryptosporidiosis on cattle farms in Gran Canaria, Canary Islands (Spain).International journal of veterinary science and medicine · 2025
    Article
  5. Current tropical medicine reports · 2024
    Review
  6. Bioprospecting ofFrontiers in microbiology · 2024
    Review
  7. Article
  8. Current research in parasitology & vector-borne diseases · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Johanna Uran-VelasquezCentro Nacional de Secuenciación Genómica-CNSG, Sede de Investigación Universitaria-SIU, Medellín, Antioquia, Colombia.
Juan F AlzateCentro Nacional de Secuenciación Genómica-CNSG, Sede de Investigación Universitaria-SIU, Medellín, Antioquia, Colombia.
Ana E Farfan-GarciaUniversidad de Santander, Facultad de Ciencias Médicas y de la Salud, Instituto de Investigación Masira, Bucaramanga, Colombia.
Oscar G Gomez-DuarteDepartment of Pediatrics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, State University of New York, Buffalo, NY, United States of America.ORCID 0000-0001-5628-5760
Larry L Martinez-RosadoEquipo Latinoamericano de Investigación en Infectología y Salud Pública (ELISAP), E.S.E. Hospital La María, Medellín, Colombia.
Diego D Dominguez-HernandezEquipo Latinoamericano de Investigación en Infectología y Salud Pública (ELISAP), E.S.E. Hospital La María, Medellín, Colombia.
Winston RojasGrupo de Investigación en Genética Molecular (GENMOL), Sede de Investigación Universitaria, Universidad de Antioquia, Medellín, Colombia.
Ana Luz Galvan-DiazGrupo de Microbiología Ambiental, Escuela de Microbiología, Universidad de Antioquia, Medellín, Antioquia, Colombia.ORCID 0000-0002-2127-4209
Gisela M Garcia-MontoyaCentro Nacional de Secuenciación Genómica-CNSG, Sede de Investigación Universitaria-SIU, Medellín, Antioquia, Colombia.

Funding

Studies on Emergent Diarrheagenic E. coli PathogensR01AI095346 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GOMEZ, OSCAR G · 2013 to 2017
$1.9M
NIAID NIH HHS R01 AI095346
6 · The paper itself

Abstract

Multilocus Sequence Typing has become a useful tool for the study of the genetic diversity and population structure of different organisms. In this study, a MLST approach with seven loci (CP47, MS5, MS9, MSC6-7, TP14, and gp60) was used to analyze the genetic diversity of Cryptosporidium hominis and Cryptosporidium parvum isolated from 28 Colombian patients. Five Cryptosporidium species were identified: C. hominis, C. parvum, Cryptosporidium felis, Cryptosporidium meleagridis, and Cryptosporidium suis. Unilocus gp60 analysis identified four allelic families for C. hominis (Ia, Ib, Id, and Ie) and two for C. parvum (IIa and IIc). There was polymorphic behavior of all markers evaluated for both C. hominis and C. parvum, particularly with the CP47, MS5, and gp60 markers. Phylogenetic analysis with consensus sequences (CS) of the markers showed a taxonomic agreement with the results obtained with the 18S rRNA and gp60 gene. Additionally, two monophyletic clades that clustered the species C. hominis and C. parvum were detected, with a higher number of subclades within the monophyletic groups compared to those with the gp60 gene. Thirteen MLG were identified for C. hominis and eight for C. parvum. Haplotypic and nucleotide diversity were detected, but only the latter was affected by the gp60 exclusion from the CS analysis. The gene fixation index showed an evolutionary closeness between the C. hominis samples and a less evolutionary closeness and greater sequence divergence in the C. parvum samples. Data obtained in this work support the implementation of MLST analysis in the study of the genetic diversity of Cryptosporidium, considering the more detailed information that it provides, which may explain some genetic events that with an unilocus approach could not be established. This is the first multilocus analysis of the intra-specific variability of Cryptosporidium from humans in South America.

Indexed as

CryptosporidiosisCryptosporidiumCryptosporidium parvumColombiaDNA, ProtozoanGenetic VariationGenotypeHumansMultilocus Sequence TypingPhylogenyDNA, Protozoan

Identifiers

PMID35802653
PMCPMC9269747

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.