Evidence map›Paper›PMID 35802347›Full record

ArticleChembiochem : a European journal of chemical biology2022

Applications and Limitations of Oxime-Linked "Split PROTACs".

Weijun Gui, Thomas Kodadek

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Facile Synthesis of Homodimeric Protein Ligands.Chembiochem : a European journal of chemical biology · 2023
    Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Weijun GuiDepartment of Chemistry, UF Scripps Biomedical Research, 120 Scripps Way, Jupiter, FL 33458, USA.
Thomas KodadekDepartment of Chemistry, UF Scripps Biomedical Research, 120 Scripps Way, Jupiter, FL 33458, USA.ORCID 0000-0003-1930-4795
Scripps Research Institute · US

Funding

Phenotypic screening using DNA-encoded librariesR01GM133041 · NIGMS · UNIVERSITY OF FLORIDA · PI KODADEK, THOMAS J. · 2018 to 2021
$3.2M
Bruker Avance III HD 600 MHz NMR spectrometerS10OD021550 · OD · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2017 to 2017
$600k
NIGMS NIH HHS R01 GM133041NIH HHS S10 OD021550
6 · The paper itself

Abstract

Proteolysis targeting chimeras are of keen interest as probe molecules and drug leads. Their activity is highly sensitive to the length and nature of the linker connecting the E3 Ubiquitin Ligase (E3 Ubl) and target protein (TP) ligands, which therefore requires tedious optimization. The creation of "split PROTACs" from E3 Ubl and TP ligands modified with residues suitable for them to couple when simply mixed together would allow various combinations to be assessed in a combinatorial fashion, thus greatly easing the workload relative to a one-by-one synthesis of many different PROTACs (proteolysis targeting chimeras). We explore oxime chemistry here for this purpose. We show that PROTAC assembly occurs efficiently when the components are mixed at a high concentration, then added to cells. However, in situ coupling of the TP and E3 Ubl ligands is inefficient when these units are added to cells at lower concentrations.

Indexed as

OximesUbiquitin-Protein LigasesLigandsProteolysisLigandsOximesUbiquitin-Protein LigasesbioconjugationBRD4oximeproteolysis targeting chimerasVHL

Identifiers

PMID35802347
PMCPMC9594079
OpenAlexW4284958712

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.