Evidence map›Paper›PMID 35802025›Full record

ArticleCancer research2022

FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits.

Jessica W Tsai, Paloma Cejas, Dayle K Wang, Smruti Patel, David W Wu, Phonepasong Arounleut, Xin Wei, Ningxuan Zhou, Sudeepa Syamala, Frank P B Dubois and 39 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

49 authors at 14 institutions in 4 countries.

Jessica W TsaiBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0003-0540-4330
Paloma CejasDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, Massachusetts.
Dayle K WangBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-2185-1782
Smruti PatelDivision of Pharmaceutical Sciences, James L. Winkle College of Pharmacy, University of Cincinnati, Cincinnati, Ohio.ORCID 0000-0002-9026-0660
David W WuBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0001-6197-7091
Phonepasong ArounleutDivision of Pharmaceutical Sciences, James L. Winkle College of Pharmacy, University of Cincinnati, Cincinnati, Ohio.
Xin WeiDivision of Pharmaceutical Sciences, James L. Winkle College of Pharmacy, University of Cincinnati, Cincinnati, Ohio.
Ningxuan ZhouDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, Massachusetts.
Sudeepa SyamalaDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-0476-3083
Frank P B DuboisBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-7654-6208
Alexander CraneBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0003-1930-279X
Kristine PeltonDepartment of Oncologic Pathology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.
Jayne VogelzangDepartment of Oncologic Pathology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.
Cecilia SousaDepartment of Oncologic Pathology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.
Audrey BaguetteQuantitative Life Sciences, McGill University, Montreal, Quebec H3A 2A7, Canada.ORCID 0000-0001-8011-2341
Xiaolong ChenDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0001-8283-0582
Alexandra L ConduratBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-7297-3982
Sarah E Dixon-ClarkeDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts.
Kevin N ZhouBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0003-1567-3606
Sophie D LuBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Elizabeth M GonzalezBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Madison S ChaconBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Jeromy J DigiacomoBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Rushil KumbhaniBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Dana NovikovBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-1388-9270
J'Ya HunterBroad Institute of MIT and Harvard, Cambridge, Massachusetts.
Maria TsoliChildren's Cancer Institute, Lowy Cancer Research Centre, University of New South Wales, Sydney, NSW, Australia.ORCID 0000-0003-1155-0510
David S ZieglerChildren's Cancer Institute, Lowy Cancer Research Centre, University of New South Wales, Sydney, NSW, Australia.
Uta DirksenWest German Cancer Center, Pediatrics III, University Hospital Essen, Essen, Germany.ORCID 0000-0002-5435-7860
Natalie JagerHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg University Hospital and German Cancer Research Center (DKFZ) Heidelberg, Germany.
Gnana Prakash BalasubramanianHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg University Hospital and German Cancer Research Center (DKFZ) Heidelberg, Germany.ORCID 0000-0003-3901-1244
Christof M KrammDivision of Pediatric Hematology and Oncology, University Medical Center Göttingen, Göttingen, Germany.ORCID 0000-0002-5017-926X
Michaela NathrathDepartment of Pediatric Hematology and Oncology, Klinikum Kassel, Kassel, Germany.
Stefan BielackUniversity Hospital Stuttgart, Stuttgart, Germany.ORCID 0000-0003-2144-3153
Suzanne J BakerDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Jinghui ZhangDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0003-3350-9682
James M McFarlandBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0001-9978-480X
Gad GetzBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-0936-0753
François AguetBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0001-9414-300X
Nada JabadoDepartment of Human Genetics, McGill University, Montreal, H3A 0C7, Canada.
Olaf WittHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg University Hospital and German Cancer Research Center (DKFZ) Heidelberg, Germany.
Stefan M PfisterHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg University Hospital and German Cancer Research Center (DKFZ) Heidelberg, Germany.ORCID 0000-0002-5447-5322
Keith L LigonBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-7733-600X
Volker HovestadtBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-3480-6649
Claudia L KleinmanLady Davis Research Institute, Jewish General Hospital, Montreal, Quebec H3T 1E2, Canada.ORCID 0000-0002-5158-7126
Henry LongDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, Massachusetts.ORCID 0000-0001-6849-6629
David T W Jones *Hopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg University Hospital and German Cancer Research Center (DKFZ) Heidelberg, Germany.ORCID 0000-0002-2036-5141
Pratiti Bandopadhayay *Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Timothy N Phoenix *Division of Pharmaceutical Sciences, James L. Winkle College of Pharmacy, University of Cincinnati, Cincinnati, Ohio.ORCID 0000-0003-4771-4003
Broad Institute · USDana-Farber Cancer Institute · USGerman Cancer Research Center · DESt. Jude Children's Research Hospital · USUniversity of Cincinnati · USCancer Institute of New South Wales · AUJewish General Hospital · CABoston University · USCincinnati Children's Hospital Medical Center · USDC Cancer Consortium · USMcGill University Health Centre · CATUM Klinikum · DEUniversitätsmedizin Göttingen · DEUniversity of Stuttgart · DE

Funding

The DNA Damage Response and Tumorigenesis in the BrainP01CA096832 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SUZANNE J. · 2003 to 2025
$38.0M
Research Training in Pediatric OncologyT32CA136432 · NCI · DANA-FARBER CANCER INST · PI SCOTT A ARMSTRONG · 2009 to 2026
$7.9M
Characterizing TP53 and PPM1D mutations as resistance drivers to radiation therapy in Diffuse Intrinsic Pontine GliomasR01CA219943 · NCI · BROAD INSTITUTE, INC. · PI BEROUKHIM, RAMEEN, LIGON, KEITH LLOYD · 2017 to 2021
$2.5M
Targeting vulnerabilities of PPM1D-mutant gliomasR37CA255245 · NCI · DANA-FARBER CANCER INST · PI Pratiti Bandopadhayay · 2021 to 2026
$2.4M
NCI NIH HHS P01 CA096832NCI NIH HHS R01 CA219943NCI NIH HHS R37 CA255245NCI NIH HHS T32 CA136432
6 · The paper itself

Abstract

Forkhead box R2 (FOXR2) is a forkhead transcription factor located on the X chromosome whose expression is normally restricted to the testis. In this study, we performed a pan-cancer analysis of FOXR2 activation across more than 10,000 adult and pediatric cancer samples and found FOXR2 to be aberrantly upregulated in 70% of all cancer types and 8% of all individual tumors. The majority of tumors (78%) aberrantly expressed FOXR2 through a previously undescribed epigenetic mechanism that involves hypomethylation of a novel promoter, which was functionally validated as necessary for FOXR2 expression and proliferation in FOXR2-expressing cancer cells. FOXR2 promoted tumor growth across multiple cancer lineages and co-opted ETS family transcription circuits across cancers. Taken together, this study identifies FOXR2 as a potent and ubiquitous oncogene that is epigenetically activated across the majority of human cancers. The identification of hijacking of ETS transcription circuits by FOXR2 extends the mechanisms known to active ETS transcription factors and highlights how transcription factor families cooperate to enhance tumorigenesis. SIGNIFICANCE: This work identifies a novel promoter that drives aberrant FOXR2 expression and delineates FOXR2 as a pan-cancer oncogene that specifically activates ETS transcriptional circuits across human cancers. See related commentary by Liu and Northcott, p. 2977.

Indexed as

Forkhead Transcription FactorsNeoplasmsAdultCarcinogenesisCell ProliferationChildEpigenesis, GeneticHumansMaleOncogenesProto-Oncogene Proteins c-etsTranscriptional ActivationForkhead Transcription FactorsFOXR2 protein, humanProto-Oncogene Proteins c-ets

Identifiers

PMID35802025
PMCPMC9437574
OpenAlexW4284970869

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.