Evidence map›Paper›PMID 35800465›Full record

ArticleBio-protocol2022

Production and Crystallization of Nanobodies in Complex with the Receptor Binding Domain of the SARS-CoV-2 Spike Protein.

Audrey Le Bas, Halina Mikolajek, Jiandong Huo, Joshua Dormon, James H Naismith, Raymond J Owens

Open access · greenAbstract read
In one paragraph

Article in Bio-protocol, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Audrey Le BasStructural Biology, The Rosalind Franklin Institute, Harwell Science Campus, UK.
Halina MikolajekDiamond Light Source Ltd, Harwell Science Campus, UK.
Jiandong HuoStructural Biology, The Rosalind Franklin Institute, Harwell Science Campus, UK.
Joshua DormonStructural Biology, The Rosalind Franklin Institute, Harwell Science Campus, UK.
James H NaismithStructural Biology, The Rosalind Franklin Institute, Harwell Science Campus, UK.
Raymond J OwensStructural Biology, The Rosalind Franklin Institute, Harwell Science Campus, UK.
Centre for Human Genetics · GBRosalind Franklin Institute · GBDiamond Light Source · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The receptor binding domain (RBD) of the spike protein of SARS-CoV-2 binds angiotensin converting enzyme-2 (ACE-2) on the surface of epithelial cells, leading to fusion, and entry of the virus into the cell. This interaction can be blocked by the binding of llama-derived nanobodies (VHHs) to the RBD, leading to virus neutralisation. Structural analysis of VHH-RBD complexes by X-ray crystallography enables VHH epitopes to be precisely mapped, and the effect of variant mutations to be interpreted and predicted. Key to this is a protocol for the reproducible production and crystallization of the VHH-RBD complexes. Based on our experience, we describe a workflow for expressing and purifying the proteins, and the screening conditions for generating diffraction quality crystals of VHH-RBD complexes. Production and crystallization of protein complexes takes approximately twelve days, from construction of vectors to harvesting and freezing crystals for data collection.

Indexed as

CrystallizationNanobodiesProtein purificationReceptor Binding DomainSARS CoV-2

Identifiers

PMID35800465
PMCPMC9090526
OpenAlexW4284970570

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.