Evidence map›Paper›PMID 35798889›Full record

ArticleNature microbiology2022

Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing.

Fengbin Wang, Khawla Mustafa, Victor Suciu, Komal Joshi, Chi H Chan, Sol Choi, Zhangli Su, Dong Si, Allon I Hochbaum, Edward H Egelman and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 112 citations in OpenAlex.

  1. Review
  2. Review
  3. Heme handling in the system II heme lyase CcsBA from Bacteroides thetaiotaomicron.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Article
  4. Review
  5. Article
  6. Sources of non-Arrhenius electron transport in bacterial nanowires.Physical chemistry chemical physics : PCCP · 2026
    Article
  7. Article
  8. Review
  9. Review
  10. Cytochrome nanowires under electron microscopy.Emerging topics in life sciences · 2026
    Review
  11. The role ofSustainable microbiology · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Fengbin Wang *Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA.
Khawla Mustafa *Department of Chemistry, University of California, Irvine, Irvine, CA, USA.
Victor SuciuDivision of Computing and Software Systems, University of Washington Bothell, Bothell, WA, USA.ORCID http://orcid.org/0000-0003-2335-2650
Komal JoshiDepartment of Plant and Microbial Biology and BioTechnology Institute, University of Minnesota, Saint Paul, MN, USA.
Chi H ChanDepartment of Plant and Microbial Biology and BioTechnology Institute, University of Minnesota, Saint Paul, MN, USA.
Sol ChoiDepartment of Plant and Microbial Biology and BioTechnology Institute, University of Minnesota, Saint Paul, MN, USA.ORCID http://orcid.org/0000-0002-0033-0734
Zhangli SuDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL, USA.ORCID http://orcid.org/0000-0001-6495-3351
Dong SiDivision of Computing and Software Systems, University of Washington Bothell, Bothell, WA, USA.ORCID http://orcid.org/0000-0001-7039-2589
Allon I HochbaumDepartment of Chemistry, University of California, Irvine, Irvine, CA, USA. hochbaum@uci.edu.ORCID http://orcid.org/0000-0002-5377-8065
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA. egelman@virginia.edu.ORCID http://orcid.org/0000-0003-4844-5212
Daniel R BondDepartment of Plant and Microbial Biology and BioTechnology Institute, University of Minnesota, Saint Paul, MN, USA. dbond@umn.edu.ORCID http://orcid.org/0000-0001-8083-7107
University of Minnesota · USUniversity of California, Irvine · USUniversity of Virginia · USUniversity of Washington Bothell · USUniversity of Alabama at Birmingham · US

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
Understanding and using microbial conductive nanowiresR00GM138756 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WANG, FENGBIN · 2022 to 2024
$895k
Understanding and using microbial conductive nanowiresK99GM138756 · NIGMS · UNIVERSITY OF VIRGINIA · PI WANG, FENGBIN · 2021 to 2022
$130k
NCRR NIH HHS G20 RR031199NIGMS NIH HHS K99 GM138756NIGMS NIH HHS R00 GM138756NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Electrically conductive appendages from the anaerobic bacterium Geobacter sulfurreducens were first observed two decades ago, with genetic and biochemical data suggesting that conductive fibres were type IV pili. Recently, an extracellular conductive filament of G. sulfurreducens was found to contain polymerized c-type cytochrome OmcS subunits, not pilin subunits. Here we report that G. sulfurreducens also produces a second, thinner appendage comprised of cytochrome OmcE subunits and solve its structure using cryo-electron microscopy at ~4.3 Å resolution. Although OmcE and OmcS subunits have no overall sequence or structural similarities, upon polymerization both form filaments that share a conserved haem packing arrangement in which haems are coordinated by histidines in adjacent subunits. Unlike OmcS filaments, OmcE filaments are highly glycosylated. In extracellular fractions from G. sulfurreducens, we detected type IV pili comprising PilA-N and -C chains, along with abundant B-DNA. OmcE is the second cytochrome filament to be characterized using structural and biophysical methods. We propose that there is a broad class of conductive bacterial appendages with conserved haem packing (rather than sequence homology) that enable long-distance electron transport to chemicals or other microbial cells.

Indexed as

GeobacterBase CompositionCryoelectron MicroscopyCytochromesHemePhylogenyRNA, Ribosomal, 16SSequence Analysis, DNACytochromesHemeRNA, Ribosomal, 16S

Identifiers

PMID35798889
PMCPMC9357133
OpenAlexW4284713443

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.