Evidence map›Paper›PMID 35798723›Full record

ArticleNature communications2022

A cryptic third active site in cyanophycin synthetase creates primers for polymerization.

Itai Sharon, Sharon Pinus, Marcel Grogg, Nicolas Moitessier, Donald Hilvert, T Martin Schmeing

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Structure and function of a hexameric cyanophycin synthetase 2.Protein science : a publication of the Protein Society · 2023
    Article
  3. Article
  4. Discovery of cyanophycin dipeptide hydrolase enzymes suggests widespread utility of the natural biopolymer cyanophycin.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Itai SharonDepartment of Biochemistry and Centre de recherche en biologie structurale, McGill University, Montréal, QC, H3G 0B1, Canada.ORCID 0000-0002-5844-3133
Sharon PinusDepartment of Chemistry, McGill University, Montreal, QC, H3A 0B8, Canada.
Marcel GroggLaboratory of Organic Chemistry, ETH Zürich, CH-8093, Zürich, Switzerland.
Nicolas MoitessierDepartment of Chemistry, McGill University, Montreal, QC, H3A 0B8, Canada.ORCID 0000-0001-6933-2079
Donald HilvertLaboratory of Organic Chemistry, ETH Zürich, CH-8093, Zürich, Switzerland.ORCID 0000-0002-3941-621X
T Martin SchmeingDepartment of Biochemistry and Centre de recherche en biologie structurale, McGill University, Montréal, QC, H3G 0B1, Canada. martin.schmeing@mcgill.ca.ORCID 0000-0002-8061-0436
McGill University · CAETH Zurich · CH

Funding

CIHR 178084
6 · The paper itself

Abstract

Cyanophycin is a nitrogen reserve biopolymer in many bacteria that has promising industrial applications. Made by cyanophycin synthetase 1 (CphA1), it has a poly-L-Asp backbone with L-Arg residues attached to each aspartate sidechain. CphA1s are thought to typically require existing segments of cyanophycin to act as primers for cyanophycin polymerization. In this study, we show that most CphA1s will not require exogenous primers and discover the surprising cause of primer independence: CphA1 can make minute quantities of cyanophycin without primer, and an unexpected, cryptic metallopeptidase-like active site in the N-terminal domain of many CphA1s digests these into primers, solving the problem of primer availability. We present co-complex cryo-EM structures, make mutations that transition CphA1s between primer dependence and independence, and demonstrate that primer dependence can be a limiting factor for cyanophycin production in heterologous hosts. In CphA1, domains with opposite catalytic activities combine into a remarkable, self-sufficient, biosynthetic nanomachine.

Indexed as

Bacterial ProteinsPeptide SynthasesCatalytic DomainPlant ProteinsPolymerizationBacterial Proteinscyanophycincyanophycin synthase, bacteriaPeptide SynthasesPlant Proteins

Identifiers

PMID35798723
PMCPMC9262961
OpenAlexW4284670633

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.