Evidence map›Paper›PMID 35798721›Full record

ArticleNature communications2022

Characterization of SARS-CoV-2 Spike mutations important for infection of mice and escape from human immune sera.

Raveen Rathnasinghe, Sonia Jangra, Chengjin Ye, Anastasija Cupic, Gagandeep Singh, Carles Martínez-Romero, Lubbertus C F Mulder, Thomas Kehrer, Soner Yildiz, Angela Choi and 19 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Modeling the Exposome in Murine Cardiovascular Disease.JACC. Basic to translational science · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Mechanisms of sex differences in acute and long COVID sequelae in mice.bioRxiv : the preprint server for biology · 2025
    Article
  8. Molecular mechanisms of SARS-CoV-2 entry: implications for biomedical strategies.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  9. Article
  10. AnnCovDB: a manually curated annotation database for mutations in SARS-CoV-2 spike protein.Database : the journal of biological databases and curation · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Adaptation of SARS-CoV-2 to ACE2Journal of virology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 2 countries.

Raveen Rathnasinghe *Department of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0002-1260-2493
Sonia Jangra *Department of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Chengjin YeTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0002-1934-9494
Anastasija CupicDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0002-1291-1042
Gagandeep SinghDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0003-3260-2631
Carles Martínez-RomeroDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0001-8888-7715
Lubbertus C F MulderDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Thomas KehrerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Soner YildizDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Angela ChoiDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Stephen T YeungDivision of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York, NY, USA.
Ignacio MenaDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0001-5464-7086
Virginia GillespieCenter for Comparative Medicine and Surgery, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0003-3387-0021
Jana De VriezeDepartment of Pharmaceutics, Ghent University, Ghent, Belgium.
Sadaf AslamDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
Daniel StadlbauerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0001-6792-7650
David A MeekinsDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA.
Chester D McDowellDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA.
Velmurugan BalaramanDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA.
Michael J CorleyDivision of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York, NY, USA.
Juergen A RichtDepartment of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA.ORCID 0000-0001-7308-5672
Bruno G De GeestDepartment of Pharmaceutics, Ghent University, Ghent, Belgium.
Lisa MiorinDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.
PVI study group
Florian KrammerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0003-4121-776X
Luis Martinez-SobridoTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0001-7084-0804
Viviana SimonDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA.ORCID 0000-0002-6416-5096
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA. Adolfo.Garcia-Sastre@mssm.edu.ORCID 0000-0002-6551-1827
Michael SchotsaertDepartment of Microbiology, Icahn School of Medicine at Mount Sinai New York, New York, NY, USA. michael.schotsaert@mssm.edu.ORCID 0000-0003-3156-3132
Icahn School of Medicine at Mount Sinai · USKansas State University · USTexas Biomedical Research Institute · USCornell University · USGhent University · BEModerna Therapeutics (United States) · USSeqirus (United States) · USTisch Hospital · US

Funding

COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Sex-specific effects of obestity on Influenza A virus infection and immunityP20GM130448 · NIGMS · KANSAS STATE UNIVERSITY · PI Juergen A Richt · 2020 to 2026
$15.8M
Vulnerability of SARS- CoV-2 Infection in Lung Cancer Based on Serological Antibody AnalysesU54CA260560 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHYR, YU · 2020 to 2024
$10.0M
HIV-1-dependent HERV-K proteomeR21AI150355 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MULDER, LUBBERTUS C · 2020 to 2021
$484k
NCI NIH HHS U54 CA260560NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93021C00016NIAID NIH HHS HHSN272201400006CNIAID NIH HHS HHSN272201400008CNIAID NIH HHS R21 AI150355NIAID NIH HHS U19 AI135972NIGMS NIH HHS P20 GM130448NIH HHS 75N93019C00051NIH HHS 75N93021C00016NIH HHS HHSN272201400008C
6 · The paper itself

Abstract

Due to differences in human and murine angiotensin converting enzyme 2 (ACE-2) receptor, initially available SARS-CoV-2 isolates could not infect mice. Here we show that serial passaging of USA-WA1/2020 strain in mouse lungs results in "mouse-adapted" SARS-CoV-2 (MA-SARS-CoV-2) with mutations in S, M, and N genes, and a twelve-nucleotide insertion in the S gene. MA-SARS-CoV-2 infection causes mild disease, with more pronounced morbidity depending on genetic background and in aged and obese mice. Two mutations in the S gene associated with mouse adaptation (N501Y, H655Y) are present in SARS-CoV-2 variants of concern (VoCs). N501Y in the receptor binding domain of viruses of the B.1.1.7, B.1.351, P.1 and B.1.1.529 lineages (Alpha, Beta, Gamma and Omicron variants) is associated with high transmissibility and allows VoCs to infect wild type mice. We further show that S protein mutations of MA-SARS-CoV-2 do not affect neutralization efficiency by human convalescent and post vaccination sera.

Indexed as

COVID-19Immune EvasionSARS-CoV-2Spike Glycoprotein, CoronavirusAgedAnimalsHumansImmune SeraMiceMutationImmune SeraSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID35798721
PMCPMC9261898
OpenAlexW4284701002

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.