Evidence map›Paper›PMID 35796993›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Thermofluor-Based Analysis of Protein Integrity and Ligand Interactions.

Sophia Pinz, Eva Doskocil, Wolfgang Seufert

Open access · hybridAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sophia PinzInstitute for Biochemistry, Genetics and Microbiology, University of Regensburg, Regensburg, Germany. sophia.pinz@ur.de.
Eva DoskocilInstitute for Biochemistry, Genetics and Microbiology, University of Regensburg, Regensburg, Germany.
Wolfgang SeufertInstitute for Biochemistry, Genetics and Microbiology, University of Regensburg, Regensburg, Germany. wolfgang.seufert@ur.de.
University of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermofluor is a fluorescence-based thermal shift assay, which measures temperature-induced protein unfolding and thereby yields valuable information about the integrity of a purified recombinant protein. Analysis of ligand binding to a protein is another popular application of this assay. Thermofluor requires neither protein labeling nor highly specialized equipment, and can be performed in a regular real-time PCR instrument. Thus, for a typical molecular biology laboratory, Thermofluor is a convenient method for the routine assessment of protein quality. Here, we provide Thermofluor protocols using the example of Cdc123. This ATP-grasp protein is an essential assembly chaperone of the eukaryotic translation initiation factor eIF2. We also report on a destabilized mutant protein version and on the ATP-mediated thermal stabilization of wild-type Cdc123 illustrating protein integrity assessment and ligand binding analysis as two major applications of the Thermofluor assay.

Indexed as

Eukaryotic Initiation Factor-2Protein UnfoldingAdenosine TriphosphateLigandsProtein BindingRecombinant ProteinsAdenosine TriphosphateEukaryotic Initiation Factor-2LigandsRecombinant ProteinsATPCdc123Differential scanning fluorimetryeIF2Ligand bindingProtein stabilitySYPRO OrangeThermal shift assayThermofluor

Identifiers

PMID35796993
PMCPMC9761908
OpenAlexW4285048829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.