Evidence map›Paper›PMID 35796008›Full record

ArticleThe EMBO journal2022

Structural insights into GABA transport inhibition using an engineered neurotransmitter transporter.

Deepthi Joseph, Smruti Ranjan Nayak, Aravind Penmatsa

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  6. Review
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  9. Serotonin Signaling through Lipid Membranes.ACS chemical neuroscience · 2024
    Review
  10. Article
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Deepthi JosephMolecular Biophysics Unit, Indian Institute of Science, Bangalore, India.ORCID 0000-0001-8913-9225
Smruti Ranjan NayakMolecular Biophysics Unit, Indian Institute of Science, Bangalore, India.ORCID 0000-0002-9813-3631
Aravind PenmatsaMolecular Biophysics Unit, Indian Institute of Science, Bangalore, India.ORCID 0000-0001-9519-5055
Indian Institute of Science Bangalore · IN

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
DBT-Wellcome Trust India Alliance IA/I/15/2/502063DBT-Wellcome Trust India Alliance IA/S/22/1/506242NIGMS NIH HHS P30 GM124165Wellcome Trust
6 · The paper itself

Abstract

γ-aminobutyric acid (GABA) is the major inhibitory neurotransmitter, and its levels in the synaptic space are controlled by the GABA transporter isoforms (GATs). GATs are structurally related to biogenic amine transporters but display interactions with distinct inhibitors used as anti-epileptics. In this study, we engineer the binding pocket of Drosophila melanogaster dopamine transporter to resemble GAT1 and determine high-resolution X-ray structures of the modified transporter in the substrate-free state and in complex with GAT1 inhibitors NO711 and SKF89976a that are analogs of tiagabine, a medication prescribed for the treatment of partial seizures. We observe that the primary binding site undergoes substantial shifts in subsite architecture in the modified transporter to accommodate the two GAT1 inhibitors. We also observe that SKF89976a additionally interacts at an allosteric site in the extracellular vestibule, yielding an occluded conformation. Interchanging SKF89976a interacting residue in the extracellular loop 4 between GAT1 and dDAT suggests a role for this motif in the selective control of neurotransmitter uptake. Our findings, therefore, provide vital insights into the organizational principles dictating GAT1 activity and inhibition.

Indexed as

Drosophila melanogastergamma-Aminobutyric AcidAnimalsBiological TransportGABA Plasma Membrane Transport ProteinsNeurotransmitter AgentsGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidNeurotransmitter AgentsDrosophila melanogaster dopamine transporter (dDAT)GABA transporters (GATs)GAT inhibitorsneurotransmitter sodium symporters (NSS)γ-aminobutyric acid (GABA)

Identifiers

PMID35796008
PMCPMC9340486
OpenAlexW4284709577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.