Evidence map›Paper›PMID 35794899›Full record

ArticlemedRxiv : the preprint server for health sciences2022

Outcomes of laboratory-confirmed SARS-CoV-2 infection during resurgence driven by Omicron lineages BA.4 and BA.5 compared with previous waves in the Western Cape Province, South Africa.

Mary-Ann Davies, Erna Morden, Petro Rosseau, Juanita Arendse, Jamy-Lee Bam, Linda Boloko, Keith Cloete, Cheryl Cohen, Nicole Chetty, Pierre Dane and 38 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

48 authors.

Mary-Ann DaviesHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Erna MordenHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Petro RosseauNational Department of Health, South Africa.
Juanita ArendseWestern Cape Government: Health and Wellness, South Africa.
Jamy-Lee BamHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Linda BolokoGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Keith CloeteWestern Cape Government: Health and Wellness, South Africa.
Cheryl CohenNational Institute for Communicable Diseases, National Health Laboratory Service, South Africa.
Nicole ChettyHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Pierre DaneHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Alexa HeekesHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Nei-Yuan HsiaoDivision of Medical Virology, University of Cape Town, Cape Town, Western Cape, South Africa.
Mehreen HunterHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Hannah HusseyHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Theuns JacobsHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Waasila JassatNational Institute for Communicable Diseases, National Health Laboratory Service, South Africa.
Saadiq KariemWestern Cape Government: Health and Wellness, South Africa.
Reshma KassanjeeCentre for Infectious Disease Epidemiology and Research, School of Public Health and Family Medicine, University of Cape Town, South Africa.
Inneke LaenenHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Sue Le RouxWestern Cape Government: Health and Wellness, South Africa.
Richard LessellsKwaZulu-Natal Research, Innovation & Sequencing Platform, University of KwaZulu-Natal, Durban, South Africa.
Hassan MahomedMetro Health Services, Western Cape Government: Health and Wellness.
Deborah MaughanGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Graeme MeintjesGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Marc MendelsonGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Ayanda MnguniKhayelitsha District Hospital, Western Cape Government: Health and Wellness.
Melvin MoodleyHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Katy MurieWestern Cape Government: Health and Wellness, South Africa.
Jonathan NaudeMitchells Plain Hospital, Western Cape Government: Health and Wellness.
Ntobeko A B NtusiGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Masudah PalekerHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Arifa ParkerTygerberg Hospital, Western Cape Government: Health and Wellness.
David PienaarRural Health Services, Western Cape Government: Health and Wellness.
Wolfgang PreiserNational Health Laboratory Service, South Africa.
Hans ProzeskyTygerberg Hospital, Western Cape Government: Health and Wellness.
Peter RaubenheimerGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Liezel RossouwWestern Cape Government: Health and Wellness, South Africa.
Neshaad SchruederTygerberg Hospital, Western Cape Government: Health and Wellness.
Barry SmithWestern Cape Government: Health and Wellness, South Africa.
Mariette SmithHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.
Wesley SolomonNational Department of Health, South Africa.
Greg SymonsGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Jantjie TaljaardTygerberg Hospital, Western Cape Government: Health and Wellness.
Sean WassermanGroote Schuur Hospital, Western Cape Government: Health and Wellness, South Africa.
Robert J WilkinsonThe Francis Crick Institute, Midland Road, London, NW1 1AT, UK.
Milani WolmaransNational Department of Health, South Africa.
Nicole WolterNational Institute for Communicable Diseases, National Health Laboratory Service, South Africa.
Andrew BoulleHealth Intelligence, Western Cape Government: Health and Wellness, South Africa.

Funding

Observational Antiretroviral Studies In Southern Africa (OASIS) CollaborationU01AI069924 · NIAID · UNIVERSITAT BERN · PI Cleophas Chimbetete, Mary-Ann Davies · 2006 to 2026
$55.9M
B positive_A population based evaluation of expanded ART access in pregnancyR01HD080465 · NICHD · UNIVERSITY OF CAPE TOWN · PI KALK, EMMA KATE · 2014 to 2019
$4.3M
NIAID NIH HHS U01 AI069924NICHD NIH HHS R01 HD080465Wellcome Trust
6 · The paper itself

Abstract

Objective: We aimed to compare clinical severity of Omicron BA.4/BA.5 infection with BA.1 and earlier variant infections among laboratory-confirmed SARS-CoV-2 cases in the Western Cape, South Africa, using timing of infection to infer the lineage/variant causing infection. Methods: We included public sector patients aged ≥20 years with laboratory-confirmed COVID-19 between 1-21 May 2022 (BA.4/BA.5 wave) and equivalent prior wave periods. We compared the risk between waves of (i) death and (ii) severe hospitalization/death (all within 21 days of diagnosis) using Cox regression adjusted for demographics, comorbidities, admission pressure, vaccination and prior infection. Results: Among 3,793 patients from the BA.4/BA.5 wave and 190,836 patients from previous waves the risk of severe hospitalization/death was similar in the BA.4/BA.5 and BA.1 waves (adjusted hazard ratio [aHR] 1.12; 95% confidence interval [CI] 0.93; 1.34). Both Omicron waves had lower risk of severe outcomes than previous waves. Prior infection (aHR 0.29, 95% CI 0.24; 0.36) and vaccination (aHR 0.17; 95% CI 0.07; 0.40 for boosted vs. no vaccine) were protective. Conclusion: Disease severity was similar amongst diagnosed COVID-19 cases in the BA.4/BA.5 and BA.1 periods in the context of growing immunity against SARS-CoV-2 due to prior infection and vaccination, both of which were strongly protective.

Identifiers

PMID35794899
PMCPMC9258293

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.