Evidence map›Paper›PMID 35794847›Full record

ArticleJournal of medical primatology2022

Developing and validating SARS-CoV-2 assays for nonhuman primate surveillance.

JoAnn Yee, Amanda Carpenter, Peter Nham, Bryson Halley, Koen K A Van Rompay, Jeffrey Roberts

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical primatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

JoAnn YeePrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.ORCID 0000-0002-5514-9836
Amanda CarpenterPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.
Peter NhamPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.
Bryson HalleyPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.
Koen K A Van RompayPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.
Jeffrey RobertsPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, Davis, California, USA.
Primate Conservation · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Viral Testing CoreU42OD010990 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Rhonda S Oates, Jeffrey A Roberts · 2012 to 2026
$20.1M
Viral Testing CoreU42OD010426 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Andrew Haertel, Lauren Drew Martin · 2013 to 2026
$6.0M
NIH HHS P51 OD011107NIH HHS U42 OD010426NIH HHS U42 OD010990
6 · The paper itself

Abstract

introductionIn early 2020, the California National Primate Research Center implemented surveillance to address the threat of SARS-CoV-2 infection in its nonhuman primate colony. MATERIALS/

methodsTo detect antiviral antibodies, multi-antigen assays were developed and validated on enzyme immunoassay and multiplex microbead immunofluorescent assay (MMIA) platforms. To detect viral RNA, RT-PCR was also performed. RESULTS/

conclusionUsing a 4plex, antibody was identified in 16/16 experimentally infected animals; and specificity for spike, nucleocapsid, receptor binding domain, and whole virus antigens was 95.2%, 93.8%, 94.3%, and 97.1%, respectively on surveillance samples. Six laboratories compared this MMIA favorably with nine additional laboratory-developed or commercially available assays. Using a screen and confirm algorithm, 141 of the last 2441 surveillance samples were screen-reactive requiring confirmatory testing. Although 35 samples were reactive to either nucleocapsid or spike; none were reactive to both. Over 20 000 animals have been tested and no spontaneous infections have so far been confirmed across the NIH sponsored National Primate Research Centers.

Indexed as

COVID-19SARS-CoV-2AnimalsAntibodies, ViralRNA, ViralSensitivity and SpecificityAntibodies, ViralRNA, Viralantibodydiagnostic testing algorithmRT-PCR

Identifiers

PMID35794847
PMCPMC9350325
OpenAlexW4284882458

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.