Evidence map›Paper›PMID 35794474›Full record

ArticleNature2022

A time-resolved, multi-symbol molecular recorder via sequential genome editing.

Junhong Choi, Wei Chen, Anna Minkina, Florence M Chardon, Chase C Suiter, Samuel G Regalado, Silvia Domcke, Nobuhiko Hamazaki, Choli Lee, Beth Martin and 2 more

Abstract read
In one paragraph

Article in Nature, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Genomic repeats for single-cell molecular recording.bioRxiv : the preprint server for biology · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Junhong ChoiDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. junhongc@uw.edu.ORCID http://orcid.org/0000-0001-9291-5977
Wei ChenDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5255-4166
Anna MinkinaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Florence M ChardonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Chase C SuiterDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Samuel G RegaladoDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Silvia DomckeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Nobuhiko HamazakiDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Choli LeeDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-8901-1835
Beth MartinDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Riza M DazaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. shendure@uw.edu.ORCID http://orcid.org/0000-0002-1516-1865

Funding

UW 4-Dimensional Genomic Organization of Mammalian Embryogenesis CenterUM1HG011586 · NHGRI · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M., NOBLE, WILLIAM STAFFORD · 2020 to 2024
$10.3M
Versatile, exponentially scalable methods for single cell molecular profilingR01HG010632 · NHGRI · UNIVERSITY OF WASHINGTON · PI Jay Ashok Shendure, Bruce Colston Trapnell · 2019 to 2026
$5.9M
Training in Cellular & Molecular BiologyT32GM136534 · NIGMS · UNIVERSITY OF WASHINGTON · PI Andrew Atwell Oberst, LARRY S ZWEIFEL · 2021 to 2026
$5.8M
Optimization of a massively parallel genome editing approach to link regulatory elements to their target genes during mouse germ layer formationF31HG011576 · NHGRI · UNIVERSITY OF WASHINGTON · PI REGALADO, SAMUEL · 2021 to 2024
$208k
Comprehensive identification of E3 ubiquitin ligases that degrade heart, lung, and blood-relevant transcription factorsF31HL168982 · NHLBI · UNIVERSITY OF WASHINGTON · PI SUITER, CHASE CAMERON · 2023 to 2024
$86k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG010632NHGRI NIH HHS UM1 HG011586NHLBI NIH HHS F31 HL168982NIGMS NIH HHS T32 GM136534
6 · The paper itself

Abstract

DNA is naturally well suited to serve as a digital medium for in vivo molecular recording. However, contemporary DNA-based memory devices are constrained in terms of the number of distinct 'symbols' that can be concurrently recorded and/or by a failure to capture the order in which events occur

Indexed as

DNAGene EditingGenomeCRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsRNA-SeqSingle-Cell AnalysisTime FactorsDNARNA, Guide, CRISPR-Cas Systems

Identifiers

PMID35794474
PMCPMC9352581

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.