Evidence map›Paper›PMID 35794202›Full record

ArticleCommunications biology2022

A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.

Ryota Maeda, Junso Fujita, Yoshinobu Konishi, Yasuhiro Kazuma, Hiroyuki Yamazaki, Itsuki Anzai, Tokiko Watanabe, Keishi Yamaguchi, Kazuki Kasai, Kayoko Nagata and 11 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 48 citations in OpenAlex.

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  17. NANOBODIES®: A Review of Diagnostic and Therapeutic ApplicationsInternational journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Ryota Maeda *Department of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan. maeda@cognano.co.jp.ORCID 0000-0002-1514-1071
Junso Fujita *Graduate School of Frontier Biosciences, Osaka University, Osaka, 565-0871, Japan.ORCID 0000-0003-1273-3917
Yoshinobu KonishiDepartment of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.ORCID 0000-0003-1212-7212
Yasuhiro KazumaDepartment of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.ORCID 0000-0002-1046-8286
Hiroyuki YamazakiCOGNANO Inc., Kyoto, 601-1255, Japan.
Itsuki AnzaiDepartment of Molecular Virology, Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871, Japan.
Tokiko WatanabeDepartment of Molecular Virology, Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871, Japan.
Keishi YamaguchiGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, 565-0871, Japan.
Kazuki KasaiCOGNANO Inc., Kyoto, 601-1255, Japan.ORCID 0000-0002-1803-4036
Kayoko NagataDepartment of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Yutaro YamaokaDepartment of Microbiology and Molecular Biodefense Research, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Kei MiyakawaDepartment of Microbiology and Molecular Biodefense Research, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Akihide RyoDepartment of Microbiology and Molecular Biodefense Research, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Kotaro ShirakawaDepartment of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.ORCID 0000-0002-7469-1276
Kei SatoDivision of System Virology, Department of Infectious Disease Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0003-4431-1380
Fumiaki MakinoGraduate School of Frontier Biosciences, Osaka University, Osaka, 565-0871, Japan.ORCID 0000-0001-9512-7087
Yoshiharu MatsuuraCentre for Infectious Disease Education and Research, Osaka University, Osaka, 565-0871, Japan.ORCID 0000-0001-9091-8285
Tsuyoshi InoueGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, 565-0871, Japan.
Akihiro ImuraCOGNANO Inc., Kyoto, 601-1255, Japan. akihiroimura@cognano.co.jp.ORCID 0000-0002-8673-8983
Keiichi NambaGraduate School of Frontier Biosciences, Osaka University, Osaka, 565-0871, Japan. keiichi@fbs.osaka-u.ac.jp.ORCID 0000-0003-2911-5875
Akifumi Takaori-KondoDepartment of Haematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan. atakaori@kuhp.kyoto-u.ac.jp.ORCID 0000-0001-7678-4284
Kyoto University · JPThe University of Osaka · JPYokohama City University · JPCognizant (United States) · USUbe Frontier University · JPJEOL (Japan) · JPNational Institute of Infectious Diseases · JPShizuoka City Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We are amid the historic coronavirus infectious disease 2019 (COVID-19) pandemic. Imbalances in the accessibility of vaccines, medicines, and diagnostics among countries, regions, and populations, and those in war crises, have been problematic. Nanobodies are small, stable, customizable, and inexpensive to produce. Herein, we present a panel of nanobodies that can detect the spike proteins of five SARS-CoV-2 variants of concern (VOCs) including Omicron. Here we show via ELISA, lateral flow, kinetic, flow cytometric, microscopy, and Western blotting assays that our nanobodies can quantify the spike variants. This panel of nanobodies broadly neutralizes viral infection caused by pseudotyped and authentic SARS-CoV-2 VOCs. Structural analyses show that the P86 clone targets epitopes that are conserved yet unclassified on the receptor-binding domain (RBD) and contacts the N-terminal domain (NTD). Human antibodies rarely access both regions; consequently, the clone buries hidden crevasses of SARS-CoV-2 spike proteins that go undetected by conventional antibodies.

Indexed as

COVID-19Single-Domain AntibodiesAntibodies, ViralHumansMembrane GlycoproteinsNeutralization TestsSARS-CoV-2Spike Glycoprotein, CoronavirusViral Envelope ProteinsAntibodies, ViralMembrane GlycoproteinsSingle-Domain AntibodiesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Viral Envelope Proteins

Identifiers

PMID35794202
PMCPMC9257560
OpenAlexW4283828269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.