Evidence map›Paper›PMID 35794092›Full record

ArticleNature communications2022

Population genomics of ancient and modern Trichuris trichiura.

Stephen R Doyle, Martin Jensen Søe, Peter Nejsum, Martha Betson, Philip J Cooper, Lifei Peng, Xing-Quan Zhu, Ana Sanchez, Gabriela Matamoros, Gustavo Adolfo Fontecha Sandoval and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

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  13. AssessingiScience · 2024
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  15. AdvancingPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  16. Evaluating evidence for co-geography in thebioRxiv : the preprint server for biology · 2023
    Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 15 institutions in 12 countries.

Stephen R Doyle *Wellcome Sanger Institute, Hinxton, Cambridgeshire, UK. stephen.doyle@sanger.ac.uk.ORCID 0000-0001-9167-7532
Martin Jensen Søe *Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID 0000-0002-0386-6294
Peter NejsumDepartment of Clinical Medicine, Aarhus University, Aarhus N, Denmark.
Martha BetsonSchool of Veterinary Medicine, University of Surrey, Guildford, UK.
Philip J CooperInstitute of Infection and Immunity, St George's University of London, London, UK.
Lifei PengDepartment of Parasitology, School of Basic Medical Sciences, Guangdong Medical University, Zhanjiang, Guangdong Province, People's Republic of China.
Xing-Quan ZhuCollege of Veterinary Medicine, Shanxi Agricultural University, Taigu, Shanxi Province, People's Republic of China.ORCID 0000-0003-2530-4628
Ana SanchezDepartment of Health Sciences, Brock University, St. Catharines, Ontario, Canada.ORCID 0000-0002-6683-2518
Gabriela MatamorosMicrobiology Research Institute, Ciudad Universitaria, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras.
Gustavo Adolfo Fontecha SandovalMicrobiology Research Institute, Ciudad Universitaria, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras.ORCID 0000-0001-9756-4520
Cristina CutillasDepartamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain.
Louis-Albert Tchuem TchuentéFaculty of Sciences, University of Yaoundé I, Yaoundé, Cameroon.
Zeleke MekonnenInstitute of Health, School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia.ORCID 0000-0003-3418-7291
Shaali M AmePublic Health Laboratory Ivo de Carneri, Pemba, Tanzania.
Harriet NamwanjeVector Control Division, Ministry of Health, Kampala, Uganda.
Bruno LeveckeDepartment of Translational Physiology, Infectiology and Public Health, Ghent University, Ghent, Belgium.
Matthew BerrimanWellcome Sanger Institute, Hinxton, Cambridgeshire, UK.ORCID 0000-0002-9581-0377
Brian Lund FredensborgDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID 0000-0002-4837-5974
Christian Moliin Outzen KapelDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark. chk@plen.ku.dk.ORCID 0000-0002-9539-457X
University of Copenhagen · DKNational Autonomous University of Honduras · HNWellcome Sanger Institute · GBAarhus University · DKBrock University · CAGhent University · BEGuangdong Medical College · CNJimma University · ETMinistry of Health · UGPublic Health Laboratory Ivo de Carneri · TZShanxi Agricultural University · CNSt George's, University of London · GBUniversidad de Sevilla · ESUniversité de Yaoundé I · CMUniversity of Surrey · GB

Funding

Medical Research Council MR/T020733/1Wellcome TrustWellcome Trust 206194
6 · The paper itself

Abstract

The neglected tropical disease trichuriasis is caused by the whipworm Trichuris trichiura, a soil-transmitted helminth that has infected humans for millennia. Today, T. trichiura infects as many as 500 million people, predominantly in communities with poor sanitary infrastructure enabling sustained faecal-oral transmission. Using whole-genome sequencing of geographically distributed worms collected from human and other primate hosts, together with ancient samples preserved in archaeologically-defined latrines and deposits dated up to one thousand years old, we present the first population genomics study of T. trichiura. We describe the continent-scale genetic structure between whipworms infecting humans and baboons relative to those infecting other primates. Admixture and population demographic analyses support a stepwise distribution of genetic variation that is highest in Uganda, consistent with an African origin and subsequent translocation with human migration. Finally, genome-wide analyses between human samples and between human and non-human primate samples reveal local regions of genetic differentiation between geographically distinct populations. These data provide insight into zoonotic reservoirs of human-infective T. trichiura and will support future efforts toward the implementation of genomic epidemiology of this globally important helminth.

Indexed as

TrichuriasisTrichurisAnimalsGenome-Wide Association StudyHumansMetagenomicsPhylogenyPrimates

Identifiers

PMID35794092
PMCPMC9259628
OpenAlexW4284886473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.