Evidence map›Paper›PMID 35793622›Full record

ArticleCell reports2022

A single-cell analysis of thymopoiesis and thymic iNKT cell development in pigs.

Weihong Gu, Darling Melany C Madrid, Sebastian Joyce, John P Driver

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

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  13. AhR ligands fromJournal of virology · 2024
    Article
  14. Advances in single-cell transcriptomics in animal research.Journal of animal science and biotechnology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Weihong GuDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611, USA.
Darling Melany C MadridDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611, USA.
Sebastian JoyceDepartment of Veterans Affairs, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Vanderbilt Institution for Infection, Immunology, and Inflammation, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
John P DriverDepartment of Animal Sciences, University of Florida, Gainesville, FL 32611, USA. Electronic address: driverjp@missouri.edu.
University of Florida · USVanderbilt University Medical Center · US

Funding

Harnessing Natural Killer T cells to counteract swine influenzaR01HD092286 · NICHD · UNIVERSITY OF MISSOURI-COLUMBIA · PI DRIVER, JOHN · 2017 to 2021
$2.6M
Molecular Basis of CD1D and Natural Killer T Cell FunctionR01AI137082 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JOYCE, SEBASTIAN · 2019 to 2022
$2.1M
Vaccinating at Mucosal Surfaces with Nanoparticle Conjugated Antigen and AdjuvantI01BX001444 · VA · VETERANS HEALTH ADMINISTRATION · PI JOYCE, SEBASTIAN · 2014 to 2022
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BLRD Research Career Scientist Award ApplicationIK6BX004595 · VA · VETERANS HEALTH ADMINISTRATION · PI JOYCE, SEBASTIAN · 2019 to 2025
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BLRD VA I01 BX001444BLRD VA I01 BX006010BLRD VA IK6 BX004595NIAID NIH HHS HHSN272201300006CNIAID NIH HHS R01 AI137082NICHD NIH HHS R01 HD092286
6 · The paper itself

Abstract

Many aspects of the porcine immune system remain poorly characterized, which poses a barrier to improving swine health and utilizing pigs as preclinical models. Here, we employ single-cell RNA sequencing (scRNA-seq) to create a cell atlas of the early-adolescent pig thymus. Our data show conserved features as well as species-specific differences in cell states and cell types compared with human thymocytes. We also describe several unconventional T cell types with gene expression profiles associated with innate effector functions. This includes a cell census of more than 11,000 differentiating invariant natural killer T (iNKT) cells, which reveals that the functional diversity of pig iNKT cells differs substantially from the iNKT0/1/2/17 subset differentiation paradigm established in mice. Our data characterize key differentiation events in porcine thymopoiesis and iNKT cell maturation and provide important insights into pig T cell development.

Indexed as

Natural Killer T-CellsAnimalsCell DifferentiationMiceSingle-Cell AnalysisSwineThymocytesCP: Immunologyinvariant natural killer T cellporcinesingle cell transcriptomicsthymopoiesis

Identifiers

PMID35793622
PMCPMC9704770
OpenAlexW4284674226

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.