Evidence map›Paper›PMID 35790803›Full record

ArticleScientific reports2022

Virtual reality for the observation of oncology models (VROOM): immersive analytics for oncology patient cohorts.

Chng Wei Lau, Zhonglin Qu, Daniel Draper, Rosa Quan, Ali Braytee, Andrew Bluff, Dongmo Zhang, Andrew Johnston, Paul J Kennedy, Simeon Simoff and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Visualization and exploration of linked data using virtual reality.Database : the journal of biological databases and curation · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Chng Wei LauSchool of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia. 18687330@student.westernsydney.edu.au.ORCID 0000-0002-9652-134X
Zhonglin QuSchool of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia.ORCID 0000-0003-4500-004X
Daniel DraperSamurai Punk, Melbourne, Australia.
Rosa QuanSchool of Psychology, Western Sydney University, Penrith, Australia.
Ali BrayteeSchool of Computer Science, University of Technology Sydney, Ultimo, Australia.ORCID 0000-0003-2561-6496
Andrew BluffRollerchimp, Sydney, Australia.ORCID 0000-0003-3215-279X
Dongmo ZhangSchool of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia.
Andrew JohnstonSchool of Computer Science, University of Technology Sydney, Ultimo, Australia.ORCID 0000-0001-8306-7507
Paul J KennedySchool of Computer Science, University of Technology Sydney, Ultimo, Australia.ORCID 0000-0001-7837-3171
Simeon SimoffMARCS Institute and School of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia.
Quang Vinh NguyenMARCS Institute and School of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia.ORCID 0000-0002-0815-6224
Daniel CatchpooleSchool of Computer, Data and Mathematical Sciences, Western Sydney University, Parramatta, Australia. daniel.catchpoole@health.nsw.gov.au.ORCID 0000-0001-5836-1413

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The significant advancement of inexpensive and portable virtual reality (VR) and augmented reality devices has re-energised the research in the immersive analytics field. The immersive environment is different from a traditional 2D display used to analyse 3D data as it provides a unified environment that supports immersion in a 3D scene, gestural interaction, haptic feedback and spatial audio. Genomic data analysis has been used in oncology to understand better the relationship between genetic profile, cancer type, and treatment option. This paper proposes a novel immersive analytics tool for cancer patient cohorts in a virtual reality environment, virtual reality to observe oncology data models. We utilise immersive technologies to analyse the gene expression and clinical data of a cohort of cancer patients. Various machine learning algorithms and visualisation methods have also been deployed in VR to enhance the data interrogation process. This is supported with established 2D visual analytics and graphical methods in bioinformatics, such as scatter plots, descriptive statistical information, linear regression, box plot and heatmap into our visualisation. Our approach allows the clinician to interrogate the information that is familiar and meaningful to them while providing them immersive analytics capabilities to make new discoveries toward personalised medicine.

Indexed as

Augmented RealityNeoplasmsVirtual RealityFeedbackHumansResearch Design

Identifiers

PMID35790803
PMCPMC9256599

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.