Evidence map›Paper›PMID 35789297›Full record

ArticleJournal of molecular modeling2022

An insight into reactivity and bioactivity properties of quorum sensing peptides against PDE10A: a computational peptidology approach.

Bhargav Shreevatsa, Chandan Dharmashekara, Anisha S Jain, Raghavendra Amachawadi, Raghu Ram Achar, Asad Syed, Chandan Shivamallu, Shiva Prasad Kollur, Juan Frau, Norma Flores-Holguín and 1 more

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In one paragraph

Article in Journal of molecular modeling, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Targeting FAK, VEGF, and MTA1 proteins withFrontiers in oncology · 2024
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 5 countries.

Bhargav Shreevatsa *Department of Biotechnology and Bioinformatics, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, 570015, Karnataka, India.
Chandan Dharmashekara *Department of Biotechnology and Bioinformatics, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, 570015, Karnataka, India.
Anisha S Jain *Department of Microbiology, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, 570015, Karnataka, India.
Raghavendra Amachawadi *Department of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, 66506-5800, Kansas, USA.
Raghu Ram AcharDivision of Biochemistry, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, 570015, Karnataka, India.
Asad Syed *Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.
Chandan Shivamallu *Department of Biotechnology and Bioinformatics, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, 570015, Karnataka, India. chandans@jssuni.edu.in.
Shiva Prasad Kollur *Department of Sciences, Amrita School of Arts and Sciences, Amrita Vishwa Vidyapeetham, Mysuru, 570026, Karnataka, India. shivachemist@gmail.com.
Juan Frau *Departament de Química, Universitat de les Illes Balears, Palma de Mallorca, E-07122, Illes Balears, Spain.
Norma Flores-Holguín *Laboratorio Virtual NANOCOSMOS, Departamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Chihuahua, 31136, Chihuahua, Mexico.
Daniel Glossman-Mitnik *Laboratorio Virtual NANOCOSMOS, Departamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Chihuahua, 31136, Chihuahua, Mexico. dglossman@gmail.com.ORCID http://orcid.org/0000-0002-9583-4256
JSS Academy of Higher Education and Research · INCentro de Investigación en Materiales Avanzados · MXAmrita Vishwa Vidyapeetham · INKansas State University · USKing Saud University · SAUniversitat de les Illes Balears · ES

Funding

King Saud University RSP-2021/120
6 · The paper itself

Abstract

Peptides are currently the most promising lead molecules. Quorum sensing peptides have a variety of structural features and are regularly exposed to post-translational modifications. Antiparkinsonian drugs lose their efficacy after a long period of use, and patients develop motor problems such as drug-induced dyskinesia (DIDs). The interaction between PDE10A and cAMP is necessary for dopamine neurotransmission and may play a role in Parkinson's disease pathogenesis. cAMP and cGMP are cyclic nucleotides that act as secondary messengers in the signal transduction pathway, influencing a range of CNS activities. PDE enzymes hydrolyze phosphodiester bonds to break down cAMP and cGMP, allowing them to control intracellular levels of these second messengers effectively. PDE expression, and hence cyclic nucleotide levels and their downstream targets, may change with age and in numerous age-related illnesses, including Parkinson's disease, according to mounting evidence. At the peak of dyskinesias, cyclic nucleotide levels were lower, and using phosphodiesterase inhibitors before antiparkinsonian medicines reduced the severity of dyskinesias. In a recent study, PapRIV was found to have the ability to activate BV-2 microglia cells, indicating that this quorum sensing peptide may play a role in gut-brain contact. As a result of the current in silico work, mainly focused on QSPs as a lead molecule for inhibiting PDE10A, the SRNAT QSP sequence has been a potent molecule in molecular docking and molecular dynamics simulations. Furthermore, we can test the efficiency of therapeutic components in vitro and in vivo utilizing this computational approach against PDE10A.

Indexed as

DyskinesiasParkinson DiseaseCyclic GMPHumansMolecular Docking SimulationPeptidesPhosphoric Diester HydrolasesQuorum SensingCyclic GMPPDE10A protein, humanPeptidesPhosphoric Diester HydrolasesComputational peptidologyConceptual DFTMolecular dockingMolecular modelingParkinson’s diseaseQuorum sensing peptides

Identifiers

PMID35789297
OpenAlexW4283826365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.