Evidence map›Paper›PMID 35788181›Full record

ArticleNature chemical biology2022

Targeting colorectal cancer with small-molecule inhibitors of ALDH1B1.

Zhiping Feng, Marisa E Hom, Thomas E Bearrood, Zachary C Rosenthal, Daniel Fernández, Alison E Ondrus, Yuchao Gu, Aaron K McCormick, Madeline G Tomaske, Cody R Marshall and 5 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Review
  6. Flexible protein-ligand docking with diffusion-based side-chain packing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  8. Article
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  10. Article
  11. Article
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  13. Article
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  15. Article
  16. Multiple roles of ALDH1 in health and disease.Frontiers in physiology · 2025
    Review
  17. Review
  18. The Significance of Aldehyde Dehydrogenase 1 in Cancers.International journal of molecular sciences · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Zhiping FengDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Marisa E HomDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Thomas E BearroodDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-7032-8747
Zachary C RosenthalDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5663-1379
Daniel FernándezMacromolecular Structure Knowledge Center, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6221-152X
Alison E OndrusDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6023-3290
Yuchao GuDepartment of Medicine, Stanford University, Stanford, CA, USA.
Aaron K McCormickDepartment of Medicine, Stanford University, Stanford, CA, USA.
Madeline G TomaskeDepartment of Medicine, Stanford University, Stanford, CA, USA.
Cody R MarshallDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Toni KlineSPARK at Stanford, Stanford University, Stanford, CA, USA.
Che-Hong ChenDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Daria Mochly-RosenDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6691-8733
Calvin J KuoDepartment of Medicine, Stanford University, Stanford, CA, USA.
James K ChenDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA. jameschen@stanford.edu.ORCID http://orcid.org/0000-0002-9220-8436
Stanford University · USSpark Therapeutics (United States) · USStanford Medicine · USUniversity of Illinois Chicago · USVanderbilt University Medical Center · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
UCSF Project 1U54CA224081 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Collin M Blakely · 2017 to 2026
$12.9M
MECHANISMS OF ETHANOL-INDUCED CARDIAC PROTECTIONR01AA011147 · NIAAA · STANFORD UNIVERSITY · PI DARIA MOCHLY-ROSEN · 1996 to 2026
$8.2M
Chemical tools for developmental biologyR35GM127030 · NIGMS · STANFORD UNIVERSITY · PI JAMES K CHEN · 2018 to 2026
$6.3M
Organoid-based Discovery of Oncogenic Drivers and Treatment Resistance MechanismsU01CA217851 · NCI · STANFORD UNIVERSITY · PI CURTIS, CHRISTINA N, JI, HANLEE P · 2017 to 2021
$4.7M
Targeting colorectal cancer stem cells with ALDH1B1 antagonistsR01CA244334 · NCI · STANFORD UNIVERSITY · PI CHEN, JAMES K · 2021 to 2025
$2.1M
A Modern Flexible Mass Spectrometry Platform for Advancing Proteomics ResearchS10OD030473 · OD · STANFORD UNIVERSITY · PI LEIB, RYAN D. · 2021 to 2021
$1.3M
Gli1-selective inhibitors of the Hedgehog signaling pathwayR01GM113100 · NIGMS · STANFORD UNIVERSITY · PI CHEN, JAMES K · 2015 to 2017
$1.1M
500 MHz NMR Spectrometer System with High Sensitivity Cryoprobe and Automated Sample Changer for Biochemical ResearchS10OD028697 · OD · STANFORD UNIVERSITY · PI BURNS, NOAH ZACHARY · 2020 to 2020
$709k
30-parameter FACSymphony A3 flow cytometer for Shared Resource LabS10OD026831 · OD · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2019 to 2019
$510k
Development of Gli1-Selective Therapeutics for Hedgehog Pathway-Dependent CancersF32CA183527 · NCI · STANFORD UNIVERSITY · PI ONDRUS, ALISON EVELYNN · 2014 to 2016
$153k
NCI NIH HHS F32 CA183527NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA244334NCI NIH HHS U01 CA217851NCI NIH HHS U54 CA224081NIAAA NIH HHS R01 AA011147NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM113100NIGMS NIH HHS R35 GM127030NIH HHS S10 OD026831NIH HHS S10 OD028697NIH HHS S10 OD030473
6 · The paper itself

Abstract

Aldehyde dehydrogenases (ALDHs) are promising cancer drug targets, as certain isoforms are required for the survival of stem-like tumor cells. We have discovered selective inhibitors of ALDH1B1, a mitochondrial enzyme that promotes colorectal and pancreatic cancer. We describe bicyclic imidazoliums and guanidines that target the ALDH1B1 active site with comparable molecular interactions and potencies. Both pharmacophores abrogate ALDH1B1 function in cells; however, the guanidines circumvent an off-target mitochondrial toxicity exhibited by the imidazoliums. Our lead isoform-selective guanidinyl antagonists of ALDHs exhibit proteome-wide target specificity, and they selectively block the growth of colon cancer spheroids and organoids. Finally, we have used genetic and chemical perturbations to elucidate the ALDH1B1-dependent transcriptome, which includes genes that regulate mitochondrial metabolism and ribosomal function. Our findings support an essential role for ALDH1B1 in colorectal cancer, provide molecular probes for studying ALDH1B1 functions and yield leads for developing ALDH1B1-targeting therapies.

Indexed as

Colonic NeoplasmsColorectal NeoplasmsAldehyde DehydrogenaseAldehyde Dehydrogenase 1 FamilyAldehyde Dehydrogenase, MitochondrialAldehydesGuanidinesHumansMolecular ProbesProteomeAldehyde DehydrogenaseAldehyde Dehydrogenase 1 FamilyAldehyde Dehydrogenase, MitochondrialAldehydesALDH1B1 protein, humanGuanidinesMolecular ProbesProteome

Identifiers

PMID35788181
PMCPMC9529790
OpenAlexW4283820098

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.