Evidence map›Paper›PMID 35787683›Full record

ArticleNature cell biology2022

Z-DNA is remodelled by ZBTB43 in prospermatogonia to safeguard the germline genome and epigenome.

Yingying Meng, Guliang Wang, Hongjuan He, Kin H Lau, Allison Hurt, Brianna J Bixler, Andrea Parham, Seung-Gi Jin, Xingzhi Xu, Karen M Vasquez and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Nature cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Zscan4 enables the formation of the Z compartment.Nature structural & molecular biology · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Formation and biological implications of Z-DNA.Trends in genetics : TIG · 2026
    Review
  10. Article
  11. Article
  12. Identification of an IRF-ZBP1-caspase-8-NINJ1 axis in driving PANoptosis and pathology during alcohol-associated liver disease.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Epigenetic priming in the male germline.Current opinion in genetics & development · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Yingying MengCapital Normal University College of Life Science, Beijing, China.
Guliang Wang *Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Austin, TX, USA.
Hongjuan He *Department of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.
Kin H LauBioinformatics and Biostatistics Core, Van Andel Institute, Grand Rapids, MI, USA.
Allison HurtDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.
Brianna J BixlerDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.
Andrea ParhamDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.
Seung-Gi JinDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0001-5041-0559
Xingzhi XuCapital Normal University College of Life Science, Beijing, China.
Karen M VasquezDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Austin, TX, USA.
Gerd P PfeiferDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA.
Piroska E SzabóDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, USA. piroska.szabo@vai.org.ORCID http://orcid.org/0000-0001-9314-7009
Van Andel Institute · USThe University of Texas at Austin · USShenzhen University Health Science Center · CN

Funding

REPAIR OF GENOME DESTABILIZING DNA STRUCTURESR01CA093729 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Karen M Vasquez · 2002 to 2026
$8.2M
A Novel Process Safeguards Genome Integrity In The Mammalian Germ Line-Administrative Supplement to Support Undergraduate Summer Research ExperiencesR01GM143308 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI SZABÓ, PIROSKA EDIT · 2022 to 2025
$2.1M
NCI NIH HHS R01 CA093729NIGMS NIH HHS R01 GM143308
6 · The paper itself

Abstract

Mutagenic purine-pyrimidine repeats can adopt the left-handed Z-DNA conformation. DNA breaks at potential Z-DNA sites can lead to somatic mutations in cancer or to germline mutations that are transmitted to the next generation. It is not known whether any mechanism exists in the germ line to control Z-DNA structure and DNA breaks at purine-pyrimidine repeats. Here we provide genetic, epigenomic and biochemical evidence for the existence of a biological process that erases Z-DNA specifically in germ cells of the mouse male foetus. We show that a previously uncharacterized zinc finger protein, ZBTB43, binds to and removes Z-DNA, preventing the formation of DNA double-strand breaks. By removing Z-DNA, ZBTB43 also promotes de novo DNA methylation at CG-containing purine-pyrimidine repeats in prospermatogonia. Therefore, the genomic and epigenomic integrity of the species is safeguarded by remodelling DNA structure in the mammalian germ line during a critical window of germline epigenome reprogramming.

Indexed as

DNA, Z-FormAnimalsDNADNA MethylationEpigenomeGerm CellsMaleMammalsMiceNucleic Acid ConformationPurinesPyrimidinesDNADNA, Z-FormPurinesPyrimidines

Identifiers

PMID35787683
PMCPMC9276527
OpenAlexW4283798338

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.