Evidence map›Paper›PMID 35786392›Full record

ArticleEpigenetics2022

Genomic map of candidate human imprint control regions: the imprintome.

Dereje D Jima, David A Skaar, Antonio Planchart, Alison Motsinger-Reif, Sebnem E Cevik, Sarah S Park, Michael Cowley, Fred Wright, John House, Andy Liu and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Promotion of long-term health in early life.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
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  6. Article
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  8. The complete genome of the KOLF2.1J reference iPSC line.bioRxiv : the preprint server for biology · 2026
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Dereje D JimaCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
David A SkaarCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
Antonio PlanchartCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
Alison Motsinger-ReifBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Sebnem E CevikToxicology Program, North Carolina State University, Raleigh, NC, USA.
Sarah S ParkToxicology Program, North Carolina State University, Raleigh, NC, USA.
Michael CowleyCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.ORCID 0000-0001-8564-4224
Fred WrightCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
John HouseBioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Andy LiuDepartment of Neurology, Duke University, School of Medicine, Durham, NC, USA.
Randy L JirtleCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.ORCID 0000-0003-1767-045X
Cathrine HoyoCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
North Carolina State University · USDuke University · USEnvironmental Protection Agency · US

Funding

Translational Research Support CoreP30ES025128 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Sue Fenton · 2015 to 2026
$18.3M
Collaborative Applied StatisticsZIAES103335 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI MOTSINGER-REIF, ALISON · 2019 to 2025
$9.0M
Methods development for "Omics" dataZIAES103337 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI MOTSINGER-REIF, ALISON · 2019 to 2025
$5.5M
Social adversities, epigenetics, and the obesity epidemicR01MD011746 · NIMHD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE · 2017 to 2021
$4.4M
Characterizing the Human Imprint Regulatory Regions Associated with Childhood ObesityR01HD098857 · NICHD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE, SKAAR, DAVID · 2019 to 2023
$3.0M
NICHD NIH HHS R01 HD098857NIEHS NIH HHS P30 ES025128NIMHD NIH HHS R01 MD011746
6 · The paper itself

Abstract

Imprinted genes - critical for growth, metabolism, and neuronal function - are expressed from one parental allele. Parent-of-origin-dependent CpG methylation regulates this expression at imprint control regions (ICRs). Since ICRs are established before tissue specification, these methylation marks are similar across cell types. Thus, they are attractive for investigating the developmental origins of adult diseases using accessible tissues, but remain unknown. We determined genome-wide candidate ICRs in humans by performing whole-genome bisulphite sequencing (WGBS) of DNA derived from the three germ layers and from gametes. We identified 1,488 hemi-methylated candidate ICRs, including 19 of 25 previously characterized ICRs (https://humanicr.org/). Gamete methylation approached 0% or 100% in 332 ICRs (178 paternally and 154 maternally methylated), supporting parent-of-origin-specific methylation, and 65% were in well-described CTCF-binding or DNaseI hypersensitive regions. This draft of the human imprintome will allow for the systematic determination of the role of early-acquired imprinting dysregulation in the pathogenesis of human diseases and developmental and behavioural disorders.

Indexed as

DNA MethylationGenomic ImprintingAdultAllelesChromosome MappingGenomicsHumansEpigeneticsfoetal originsgenomic imprintingimprint control regionsmethylationwhole genome

Identifiers

PMID35786392
PMCPMC9665137
OpenAlexW4283794563

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.