Evidence map›Paper›PMID 35782736›Full record

ArticleComputational and structural biotechnology journal2022

Identification of SHCBP1 as a potential biomarker involving diagnosis, prognosis, and tumor immune microenvironment across multiple cancers.

Ning Wang, Lingye Zhu, Liangxing Wang, Zhifa Shen, Xiaoying Huang

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

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  10. SHCBP1 promotes cisplatin resistance of ovarian cancer through AKT/mTOR/Autophagy pathway.Apoptosis : an international journal on programmed cell death · 2025
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  18. Ginsenoside Rh7 affects β-catenin nuclear translocation by inhibitingInternational journal of medical sciences · 2025
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  20. Bioinformatics analysis ofTranslational cancer research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ning WangDivision of Pulmonary Medicine, The First Affiliated Hospital of Wenzhou Medical University, Key Laboratory of Heart and Lung, Wenzhou, Zhejiang 325000, PR China.
Lingye ZhuDivision of Pulmonary Medicine, The First Affiliated Hospital of Wenzhou Medical University, Key Laboratory of Heart and Lung, Wenzhou, Zhejiang 325000, PR China.
Liangxing WangDivision of Pulmonary Medicine, The First Affiliated Hospital of Wenzhou Medical University, Key Laboratory of Heart and Lung, Wenzhou, Zhejiang 325000, PR China.
Zhifa ShenKey Laboratory of Laboratory Medicine, Ministry of Education of China, Zhejiang Provincial Key Laboratory of Medical Genetics, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang 325035, PR China.
Xiaoying HuangDivision of Pulmonary Medicine, The First Affiliated Hospital of Wenzhou Medical University, Key Laboratory of Heart and Lung, Wenzhou, Zhejiang 325000, PR China.
Wenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shc SH2-domain binding protein 1 (SHCBP1), a protein specific binding to SH2 domain of Src homolog and collagen homolog (Shc), takes part in the regulation of various signal transduction pathways, which has been reported to be associated with tumorigenesis and progression. However, the pathological mechanisms are not completely investigated. Thus, this study aimed to comprehensively elucidate the potential functions of SHCBP1 in multiple cancer types. The comprehensive analyses for SHCBP1 in various tumors, including gene expression, diagnosis, prognosis, immune-related features, genetic alteration, and function enrichment, were conducted based on multiple databases and analysis tools. SHCBP1 was upregulated in most types of cancers. The results of qRT-PCR had confirmed that SHCBP1 mRNA was significantly upregulated in lung adenocarcinoma (LUAD) and liver hepatocellular carcinoma (LIHC) cell lines. Based on the receiver operating characteristic (ROC) and survival analysis, SHCBP1 was considered as a potential diagnostic and prognostic biomarker. Furthermore, SHCBP1 expression was linked with tumor immunity and immunosuppressive microenvironment according to the correlation analysis of SHCBP1 expression with immune cells infiltration, immune checkpoint genes, and immune-related genes (MHC genes, chemokines, and chemokines receptors). Moreover, SHCBP1 expression correlated with tumor mutational burden (TMB), microsatellite instability (MSI), and neoantigens. The feature of SHCBP1 mutational landscape in pan-cancer was identified. Finally, we focused on investigating the clinical significance and the potential biological role of SHCBP1 in LUAD. Our study comprehensively uncovered that SHCBP1 could be identified as an immune-related biomarker for cancer diagnosis and prognosis, and a potential therapeutic target for tumor immunotherapy.

Indexed as

3D, three-dimensionalACC, adrenocortical carcinomaAUC, area under the curveBiomarkerBLCA, bladder urothelial carcinomaBRCA, breast invasive carcinomaCAF, cancer-associated fibroblastsCCLE, cancer cell line encyclopediaCESC, cervical squamous cell carcinoma and endocervical adenocarcinomaCHOL, cholangiocarcinomaCOAD, colon adenocarcinomaDEGs, differentially expressed genesDFS, disease free survivalDiagnosisDLBC, lymphoid neoplasm diffuse large B-cell lymphomaDSS, disease specific survivalER, endoplasmic reticulumESCA, esophageal carcinomaGBM, glioblastoma multiformeGO, Gene OntologyGSEA, Gene Set Enrichment AnalysisGTEx, genotype-tissue expressionHNSC, head and neck squamous cell carcinomaHR, hazard ratioICIs, immune checkpoint inhibitorsImmuno-oncologyKEGG, Kyoto encyclopedia of genes and genomesKICH, kidney chromophobeKIRC, kidney renal clear cell carcinomaKIRP, kidney renal papillary cell carcinomaLAML, acute myeloid leukemiaLGG, brain lower grade gliomaLIHC, liver hepatocellular carcinomaLUAD, lung adenocarcinomaLUSC, lung squamous cell carcinomaMDSC, myeloid-derived suppressor cellsMESO, mesotheliomaMSI, microsatellite instabilityOS, overall survivalOV, ovarian serous cystadenocarcinomaPAAD, pancreatic adenocarcinomaPan-cancerPCPG, pheochromocytoma and paragangliomaPFS, progression free survivalPPI, protein–protein interactionPRAD, prostate adenocarcinomaPrognosisREAD, rectum adenocarcinomaROC, receiver operating characteristicSARC, sarcomaSHCBP1SHCBP1, Shc SH2-domain binding protein 1SKCM, skin cutaneous melanomaSTAD, stomach adenocarcinomaTAM, tumor-associated macrophagesTCGA, the cancer genome atlasTGCT, testicular germ cell tumorsTHCA, thyroid carcinomaTHPA, the human protein atlasTHYM, thymomaTIMER 2.0, tumor immune estimation resource, version 2TIME, tumor immune microenvironmentTMB, tumor mutational burdenUCEC, uterine corpus endometrial carcinomaUCS, uterine carcinosarcomaUVM, uveal melanoma

Identifiers

PMID35782736
PMCPMC9233189
OpenAlexW4283073154

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.