ArticleComputational and structural biotechnology journal2022
Domestication and improvement genes reveal the differences of seed size- and oil-related traits in soybean domestication and improvement.
Article in Computational and structural biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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9 citing papers in PubMed.
- A GmOIL2 allele separates fertility and seed traits in soybean.Journal of integrative plant biology · 2026Article
- Loci and natural alleles for leaf length and width revealed by a genome wide association study in adzuki bean.BMC plant biology · 2025Article
- Genome-wide identification of the R2R3-MYB gene family in olive and its association with fatty acid biosynthesis.BMC plant biology · 2025Article
- Identification of QTLs and candidate genes for water-soluble protein content in soybean seeds.BMC genomics · 2024Article
- Identification of QTNs, QTN-by-environment interactions, and their candidate genes for salt tolerance related traits in soybean.BMC plant biology · 2024Article
- Genomic insights into genetic diversity and seed coat color change in common bean composite populations.Frontiers in plant science · 2024Article
- Multi-locus genome-wide association study and genomic prediction for flowering time in chrysanthemum.Planta · 2023Article
- Identification of QTN-by-environment interactions and their candidate genes for soybean seed oil-related traits using 3VmrMLM.Frontiers in plant science · 2022Article
- Genome-wide association studies provide genetic insights into natural variation of seed-size-related traits in mungbean.Frontiers in plant science · 2022Article
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7 authors.
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Abstract
To address domestication and improvement studies of soybean seed size- and oil-related traits, a series of domesticated and improved regions, loci, and candidate genes were identified in 286 soybean accessions using domestication and improvement analyses, genome-wide association studies, quantitative trait locus (QTL) mapping and bulked segregant analyses in this study. As a result, 534 candidate domestication regions (CDRs) and 458 candidate improvement regions (CIRs) were identified in this study and integrated with those in five and three previous studies, respectively, to obtain 952 CDRs and 538 CIRs; 1469 loci for soybean seed size- and oil-related traits were identified in this study and integrated with those in Soybase to obtain 433 QTL clusters. The two results were intersected to obtain 245 domestication and 221 improvement loci for the above traits. Around these trait-related domestication and improvement loci, 7 domestication and 7 improvement genes were found to be truly associated with these traits, and 372 candidate domestication and 87 candidate improvement genes were identified using gene expression, SNP variants in genome, miRNA binding, KEGG pathway, DNA methylation, and haplotype analysis. These genes were used to explain the trait changes in domestication and improvement. As a result, the trait changes can be explained by their frequencies of elite haplotypes, base mutations in coding region, and three factors affecting their expression levels. In addition, 56 domestication and 15 improvement genes may be valuable for future soybean breeding. This study can provide useful gene resources for future soybean breeding and molecular biology research.
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