Evidence map›Paper›PMID 35781905›Full record

ArticleThe Plant journal : for cell and molecular biology2022

Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass.

Dongya Wu, Yiyu Hu, Shota Akashi, Hideaki Nojiri, Longbiao Guo, Chu-Yu Ye, Qian-Hao Zhu, Kazunori Okada, Longjiang Fan

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Dongya WuHainan Institute of Zhejiang University, Yonyou Industrial Park, Sanya, 572025, China.ORCID 0000-0003-1967-2264
Yiyu HuInstitute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Shota AkashiBiotechnology Research Center, University of Tokyo, 113-8657, Tokyo, Japan.
Hideaki NojiriBiotechnology Research Center, University of Tokyo, 113-8657, Tokyo, Japan.
Longbiao GuoState Key Laboratory for Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
Chu-Yu YeInstitute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou, 310058, China.
Qian-Hao ZhuCSIRO Agriculture and Food, Black Mountain Laboratories, Canberra, ACT, 2601, Australia.ORCID 0000-0002-6505-7417
Kazunori OkadaBiotechnology Research Center, University of Tokyo, 113-8657, Tokyo, Japan.
Longjiang FanHainan Institute of Zhejiang University, Yonyou Industrial Park, Sanya, 572025, China.
Tokyo University of Technology · JPYonyou (China) · CNZhejiang University · CNChinese Academy of Agricultural Sciences · CNCommonwealth Scientific and Industrial Research Organisation · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Momilactone A, an important plant labdane-related diterpenoid, functions as a phytoalexin against pathogens and an allelochemical against neighboring plants. The genes involved in the biosynthesis of momilactone A are found in clusters, i.e., momilactone A biosynthetic gene clusters (MABGCs), in the rice and barnyardgrass genomes. In addition, we know little about the origin and evolution of MABGCs. Here, we integrated results from comprehensive phylogeny and comparative genomic analyses of the core genes of MABGC-like clusters and MABGCs in 40 monocot plant genomes, providing convincing evidence for the birth and evolution of MABGCs in grass species. The MABGCs found in the PACMAD clade of the core grass lineage (including Panicoideae and Chloridoideae) originated from a MABGC-like cluster in Triticeae (BOP clade) via lateral gene transfer (LGT) and followed by recruitment of MAS1/2 and CYP76L1 genes. The MABGCs in Oryzoideae originated from PACMAD through another LGT event and lost CYP76L1 afterwards. The Oryza MABGC and another Oryza diterpenoid cluster c2BGC are two distinct clusters, with the latter originating from gene duplication and relocation within Oryzoideae. Further comparison of the expression patterns of the MABGC genes between rice and barnyardgrass in response to pathogen infection and allelopathy provides novel insights into the functional innovation of MABGCs in plants. Our results demonstrate LGT-mediated origination of MABGCs in grass and shed lights into the evolutionary innovation and optimization of plant biosynthetic pathways.

Indexed as

DiterpenesEchinochloaOryzaMultigene FamilyPlantsPoaceaeDiterpenesbiosynthetic gene clusterditerpenoid momilactonegrasslateral gene transferphylogeny

Identifiers

PMID35781905
PMCPMC9544640
OpenAlexW4283803344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.