Evidence map›Paper›PMID 35780442›Full record

ArticleVirus genes2022

Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China.

Yanlong Zhou, Jiyu Guan, Lijun Lv, Huan Cui, Mengshi Xu, Shuai Wang, Zhaohui Yu, Ruixue Zhen, Shishi He, Ziyu Fang and 7 more

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Article in Virus genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yanlong Zhou *Key Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Jiyu Guan *Key Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Lijun LvKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Huan CuiKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Mengshi XuKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Shuai WangKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Zhaohui YuKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Ruixue ZhenKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Shishi HeKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Ziyu FangKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Jiawei ZhongKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Shanshan CuiKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Shiying YuLiupanshui Agriculture Bureau, Liupanshui, Guizhou, China.
Deguang SongKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Wenqi HeKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Feng GaoKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China.
Kui ZhaoKey Laboratory of Zoonosis Research, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun, China. kuizhao@jlu.edu.cn.ORCID http://orcid.org/0000-0002-4120-2050

Funding

Jilin University for the Excellent Youth Scholars 419080520316National Natural Science Foundation of China (CN) 31672554Scientific and Technological project of Jilin Province 20200402052NC
6 · The paper itself

Abstract

Orf virus (ORFV, species Orf virus) belongs to the typical species of the Parapoxvirus genus of the family Poxviridae, which infects sheep, goats, and humans with worldwide distribution. Although outbreaks of Orf have been reported sequentially in several Chinese provinces, the epidemiology of Orf and genetic diversity of ORFV strains still needs to be further characterized. To further reveal the genomic organization of the ORFV-GZ18 and ORFV-CL18 isolates, the complete genome sequences of two recently obtained ORFV isolates were sequenced using the next-generation sequencing technology and analyzed, which had been deposited in the GenBank database under accession number MN648218 and MN648219, respectively. The complete genomic sequence of ORFV-CL18 was 138,495 bp in length, including 131 potential open reading frames (ORFs) flanked by inverted terminal repeats (ITRs) of 3481 bp at both ends, which has genomic structure typical Parapoxviruses. The overall genomic organization of the fully sequenced genome of ORFV-GZ18 was consistent with ORFV-CL18 genome, with a complete genome size of 138,446 nucleotides, containing 131 ORFs flanked by ITRs of 3469 bp. Additionally, the overall G + C contents of ORFV-GZ18 and ORFV-CL18 genome sequences were about 63.9% and 63.8%, respectively. The phylogenetic analysis showed that both ORFV-GZ18 and ORFV-CL18 were genetically closely related to ORFV-SY17 derived from sheep. In summary, the complete genomic sequences of ORFV-GZ18 and ORFV-CL18 are reported, with the hope it will be useful to investigate the host range, geographic distribution, and genetic evolution of the virus in Southern West and Northern East China.

Indexed as

Ecthyma, ContagiousOrf virusAnimalsChinaGenomicsGoatsHumansNucleotidesPhylogenySheepNucleotidesComplete genomic sequenceGenetic evolutionGenomics analysisOrf virusPhylogenetic analysis

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.