Evidence map›Paper›PMID 35780230›Full record

ArticleNature communications2022

Metabolomics-guided discovery of cytochrome P450s involved in pseudotropine-dependent biosynthesis of modified tropane alkaloids.

Radin Sadre, Thilani M Anthony, Josh M Grabar, Matthew A Bedewitz, A Daniel Jones, Cornelius S Barry

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Radin SadreDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID 0000-0002-8412-2579
Thilani M AnthonyDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.ORCID 0000-0003-3270-6182
Josh M GrabarDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID 0000-0001-5615-8331
Matthew A BedewitzDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.
A Daniel JonesDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.ORCID 0000-0002-7408-6690
Cornelius S BarryDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA. barrycs@msu.edu.ORCID 0000-0003-4685-0273
Michigan State University · USUniversity of Colorado Boulder · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant alkaloids constitute an important class of bioactive chemicals with applications in medicine and agriculture. However, the knowledge gap of the diversity and biosynthesis of phytoalkaloids prevents systematic advances in biotechnology for engineered production of these high-value compounds. In particular, the identification of cytochrome P450s driving the structural diversity of phytoalkaloids has remained challenging. Here, we use a combination of reverse genetics with discovery metabolomics and multivariate statistical analysis followed by in planta transient assays to investigate alkaloid diversity and functionally characterize two candidate cytochrome P450s genes from Atropa belladonna without a priori knowledge of their functions or information regarding the identities of key pathway intermediates. This approach uncovered a largely unexplored root localized alkaloid sub-network that relies on pseudotropine as precursor. The two cytochrome P450s catalyze N-demethylation and ring-hydroxylation reactions within the early steps in the biosynthesis of diverse N-demethylated modified tropane alkaloids.

Indexed as

AlkaloidsTropanesCytochrome P-450 Enzyme SystemMetabolomicsAlkaloidsCytochrome P-450 Enzyme SystemTropanestropine

Identifiers

PMID35780230
PMCPMC9250511
OpenAlexW4283771295

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.