Evidence map›Paper›PMID 35780145›Full record

ArticleNature communications2022

Single-molecule FRET uncovers hidden conformations and dynamics of human Argonaute 2.

Sarah Willkomm, Leonhard Jakob, Kevin Kramm, Veronika Graus, Julia Neumeier, Gunter Meister, Dina Grohmann

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 42 citations in OpenAlex.

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  19. Structural basis for gene silencing by siRNAs in humans.bioRxiv : the preprint server for biology · 2024
    Article
  20. The structural basis for RNA slicing by human Argonaute2.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sarah WillkommInstitute of Microbiology & Archaea Centre, Single-Molecule Biochemistry Lab, University of Regensburg, 93053, Regensburg, Germany. sarah.willkomm@ur.de.ORCID 0000-0001-5023-3038
Leonhard JakobInstitute of Microbiology & Archaea Centre, Single-Molecule Biochemistry Lab, University of Regensburg, 93053, Regensburg, Germany.
Kevin KrammInstitute of Microbiology & Archaea Centre, Single-Molecule Biochemistry Lab, University of Regensburg, 93053, Regensburg, Germany.
Veronika GrausLaboratory for RNA Biology, University of Regensburg, 93053, Regensburg, Germany.
Julia NeumeierLaboratory for RNA Biology, University of Regensburg, 93053, Regensburg, Germany.
Gunter MeisterLaboratory for RNA Biology, University of Regensburg, 93053, Regensburg, Germany.ORCID 0000-0002-2098-9923
Dina GrohmannInstitute of Microbiology & Archaea Centre, Single-Molecule Biochemistry Lab, University of Regensburg, 93053, Regensburg, Germany. dina.grohmann@ur.de.ORCID 0000-0002-0570-2517
University of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human Argonaute 2 (hAgo2) constitutes the functional core of the RNA interference pathway. Guide RNAs direct hAgo2 to target mRNAs, which ultimately leads to hAgo2-mediated mRNA degradation or translational inhibition. Here, we combine site-specifically labeled hAgo2 with time-resolved single-molecule FRET measurements to monitor conformational states and dynamics of hAgo2 and hAgo2-RNA complexes in solution that remained elusive so far. We observe dynamic anchoring and release of the guide's 3'-end from the PAZ domain during the stepwise target loading process even with a fully complementary target. We find differences in structure and dynamic behavior between partially and fully paired canonical hAgo2-guide/target complexes and the miRNA processing complex formed by hAgo2 and pre-miRNA451. Furthermore, we detect a hitherto unknown conformation of hAgo2-guide/target complexes that poises them for target-directed miRNA degradation. Taken together, our results show how the conformational flexibility of hAgo2-RNA complexes determines function and the fate of the ribonucleoprotein particle.

Indexed as

Argonaute ProteinsMicroRNAsFluorescence Resonance Energy TransferHumansMolecular ConformationRNA, MessengerRNA StabilityAGO2 protein, humanArgonaute ProteinsMicroRNAsMIRN451 microRNA, humanRNA, Messenger

Identifiers

PMID35780145
PMCPMC9250533
OpenAlexW4283783306

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.