Evidence map›Paper›PMID 35778966›Full record

ArticleMicroscopy (Oxford, England)2022

Compact laboratory-based X-ray microscope enabling nondestructive 3D structure acquisition of mouse nephron with high speed and better user accessibility.

Naoki Kunishima, Yoshihiro Takeda, Raita Hirose, Satoshi Kume, Mitsuyo Maeda, Akiko Oguchi, Motoko Yanagita, Hirotoshi Shibuya, Masaru Tamura, Yosky Kataoka and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Microscopy (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Naoki KunishimaX-ray Research Laboratory, Rigaku Corporation, Akishima, Tokyo 196-8666, Japan.ORCID 0000-0001-9826-9902
Yoshihiro TakedaX-ray Research Laboratory, Rigaku Corporation, Akishima, Tokyo 196-8666, Japan.
Raita HiroseX-ray Research Laboratory, Rigaku Corporation, Akishima, Tokyo 196-8666, Japan.
Satoshi KumeLaboratory for Pathophysiological and Health Science, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo 650-0047, Japan.
Mitsuyo MaedaMulti-Modal Microstructure Analysis Unit, RIKEN-JEOL Collaboration Center, Kobe, Hyogo 650-0047, Japan.
Akiko OguchiRIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Motoko YanagitaDepartment of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Hirotoshi ShibuyaTechnology and Development Team for Mouse Phenotype Analysis, RIKEN BioResource Research Center, Tsukuba, Ibaraki 305-0074, Japan.
Masaru TamuraTechnology and Development Team for Mouse Phenotype Analysis, RIKEN BioResource Research Center, Tsukuba, Ibaraki 305-0074, Japan.
Yosky KataokaMulti-Modal Microstructure Analysis Unit, RIKEN-JEOL Collaboration Center, Kobe, Hyogo 650-0047, Japan.
Yasuhiro MurakawaRIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Koichiro ItoNew Market Development Office, Rigaku Corporation, Akishima, Tokyo 196-8666, Japan.
Kazuhiko OmoteX-ray Research Laboratory, Rigaku Corporation, Akishima, Tokyo 196-8666, Japan.
Rigaku (Japan) · JPKyoto University · JPJEOL (Japan) · JPRIKEN BioResource Research Center · JPOsaka City University · JP

Funding

JSPS KAKENHI 18K19766RIKEN Aging ProjectRIKEN Engineering Network Project
6 · The paper itself

Abstract

X-ray microscopes adopting computed tomography enable nondestructive 3D visualization of biological specimens at micron-level resolution without conventional 2D serial sectioning that is a destructive/laborious method and is routinely used for analyzing renal biopsy in clinical diagnosis of kidney diseases. Here we applied a compact commercial system of laboratory-based X-ray microscope to observe a resin-embedded osmium-stained 1-mm strip of a mouse kidney piece as a model of renal biopsy, toward a more efficient diagnosis of kidney diseases. A reconstructed computed tomography image from several hours of data collection using CCD detector allowed us to unambiguously segment a single nephron connected to a renal corpuscle, which was consistent with previous reports using serial sectioning. Histogram analysis on the segmented nephron confirmed that the proximal and distal tubules were distinguishable on the basis of their X-ray opacities. A 3D rendering model of the segmented nephron visualized a convoluted structure of renal tubules neighboring the renal corpuscle and a branched structure of efferent arterioles. Furthermore, another data collection using scientific complementary metal-oxide semiconductor detector with a much shorter data acquisition time of 15 min provided similar results from the same samples. These results suggest a potential application of the compact laboratory-based X-ray microscope to analyze mouse renal biopsy.

Indexed as

Kidney DiseasesMicroscopyAnimalsMiceX-Rays3D renderingbiopsykidneynephrontomographyX-ray microscopy

Identifiers

PMID35778966
PMCPMC9731380
OpenAlexW4283769433

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.