Evidence map›Paper›PMID 35778474›Full record

ArticleScientific reports2022

Multimodal NASH prognosis using 3D imaging flow cytometry and artificial intelligence to characterize liver cells.

Ramkumar Subramanian, Rui Tang, Zunming Zhang, Vaidehi Joshi, Jeffrey N Miner, Yu-Hwa Lo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Highly Efficient Calibration-Free Color Compensation Algorithm for Imaging Flow Cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2025
    Article
  3. Review
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ramkumar Subramanian *Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, 92093, USA.
Rui Tang *Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, 92093, USA.
Zunming ZhangDepartment of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, 92093, USA.
Vaidehi JoshiViscient Biosciences Inc, San Diego, CA, 92121, USA.
Jeffrey N MinerViscient Biosciences Inc, San Diego, CA, 92121, USA.
Yu-Hwa LoDepartment of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, 92093, USA. ylo@ucsd.edu.ORCID http://orcid.org/0000-0003-4602-1627
University of California San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To improve the understanding of the complex biological process underlying the development of non-alcoholic steatohepatitis (NASH), 3D imaging flow cytometry (3D-IFC) with transmission and side-scattered images were used to characterize hepatic stellate cell (HSC) and liver endothelial cell (LEC) morphology at single-cell resolution. In this study, HSC and LEC were obtained from biopsy-proven NASH subjects with early-stage NASH (F2-F3) and healthy controls. Here, we applied single-cell imaging and 3D digital reconstructions of healthy and diseased cells to analyze a spatially resolved set of morphometric cellular and texture parameters that showed regression with disease progression. By developing a customized autoencoder convolutional neural network (CNN) based on label-free cell transmission and side scattering images obtained from a 3D imaging flow cytometer, we demonstrated key regulated cell types involved in the development of NASH and cell classification performance superior to conventional machine learning methods.

Indexed as

Non-alcoholic Fatty Liver DiseaseArtificial IntelligenceFlow CytometryHumansImaging, Three-DimensionalPrognosis

Identifiers

PMID35778474
PMCPMC9249889
OpenAlexW4283771151

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.