Evidence map›Paper›PMID 35778398›Full record

ArticleNature communications2022

A natural uORF variant confers phosphorus acquisition diversity in soybean.

Zilong Guo, Hongrui Cao, Jing Zhao, Shuang Bai, Wenting Peng, Jian Li, Lili Sun, Liyu Chen, Zhihao Lin, Chen Shi and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. Article
  7. Article
  8. Review
  9. Control of seed-to-seedling transition by an upstream open reading frame inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Regulatory Mechanism ofBiomolecules · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Opportunity for genome engineering to enhance phosphate homeostasis in crops.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Zilong Guo *Root Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-2824-0060
Hongrui Cao *Root Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Jing ZhaoRoot Biology Center, South China Agricultural University, Guangzhou, China.
Shuang BaiRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Wenting PengRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Jian LiRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Lili SunRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Liyu ChenRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Zhihao LinRoot Biology Center, South China Agricultural University, Guangzhou, China.
Chen ShiRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Qing YangRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Yongqing YangRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China.
Xiurong WangRoot Biology Center, South China Agricultural University, Guangzhou, China.
Jiang TianRoot Biology Center, South China Agricultural University, Guangzhou, China.ORCID 0000-0002-1104-7803
Zhichang ChenRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China. zcchen@fafu.edu.cn.ORCID 0000-0001-8225-3527
Hong LiaoRoot Biology Center, Fujian Agriculture and Forestry University, Fuzhou, China. hliao@fafu.edu.cn.ORCID 0000-0002-6702-7289
Fujian Agriculture and Forestry University · CNSouth China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphorus (P) is an essential element for all organisms. Because P fertilizers are a non-renewable resource and high fixation in soils, sustainable agriculture requires researchers to improve crop P acquisition efficiency. Here, we report a strong association signal at a locus of CPU1 (component of phosphorus uptake 1), from a genome-wide association study of P acquisition efficiency in a soybean core collection grown in the field. A SEC12-like gene, GmPHF1, is identified as the causal gene for CPU1. GmPHF1 facilitates the ER (endoplasmic reticulum) exit of the phosphate transporter, GmPT4, to the plasma membrane of root epidermal cells. A common SNP in an upstream open reading frame (uORF) of GmPHF1, which alters the abundance of GmPHF1 in a tissue-specific manner, contributes to P acquisition diversity in soybean. A natural genetic variation conditions diversity in soybean P acquisition, which can be used to develop P-efficient soybean genotypes.

Indexed as

Glycine maxPhosphorusGenome-Wide Association StudyOpen Reading FramesPhosphate Transport ProteinsPhosphate Transport ProteinsPhosphorus

Identifiers

PMID35778398
PMCPMC9249851
OpenAlexW4283749833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.