Evidence map›Paper›PMID 35778264›Full record

ArticleThe Journal of heredity2022

Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems.

Giacomo Bernardi, Melissa DeBiasse, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Courtney Miller, Erin Toffelmier, H Bradley Shaffer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of heredity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Giacomo BernardiDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, CA 95060, USA.ORCID 0000-0002-8249-4678
Melissa DeBiasseSchool of Natural Sciences, University of California Merced, CA 95343, USA.
Merly EscalonaDepartment of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA.ORCID 0000-0003-0213-4777
Mohan P A MarimuthuDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California-Davis, CA 95616, USA.ORCID 0000-0001-6121-3286
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California-Davis, CA 95616, USA.
Samuel SaccoDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, CA 95060, USA.
Eric BerautDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, CA 95060, USA.
Courtney MillerDepartment of Ecology & Evolutionary Biology, University of California, Los Angeles, CA 90095-7239, USA.
Erin ToffelmierDepartment of Ecology & Evolutionary Biology, University of California, Los Angeles, CA 90095-7239, USA.
H Bradley ShafferDepartment of Ecology & Evolutionary Biology, University of California, Los Angeles, CA 90095-7239, USA.ORCID 0000-0002-5795-9242
University of California, Santa Cruz · USUniversity of California, Los Angeles · USUniversity of California, Davis · USUniversity of California, Merced · US

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp forests ecosystems, is a large wrasse, the California Sheephead, Semicossyphus pulcher. We present a reference genome for this ecologically important species that will serve as a key resource for future conservation research of California's inshore marine environment utilizing genomic tools to address changes in life-history traits, dispersal, range shifts, and ecological interactions among members of the kelp forest ecological assemblages. Our genome assembly of S. pulcher has a total length of 0.794 Gb, which is similar to many other marine fishes. The assembly is largely contiguous (N50 = 31.9 Mb) and nearly complete (BUSCO single-copy core gene content = 98.1%). Within the context of the California Conservation Genomics Project (CCGP), the genome of S. pulcher will be used as an important reference resource for ongoing whole genome resequencing efforts of the species.

Indexed as

KelpPerciformesAnimalsCaliforniaEcosystemFishesFood ChainForestsSea UrchinsCalifornia Conservation Genomics ProjectCCGP

Identifiers

PMID35778264
PMCPMC9709978
OpenAlexW4283776718

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.