Evidence map›Paper›PMID 35776893›Full record

ArticleACS chemical biology2022

Introducing a New Bond-Forming Activity in an Archaeal DNA Polymerase by Structure-Guided Enzyme Redesign.

Tushar Aggarwal, William A Hansen, Jonathan Hong, Abir Ganguly, Darrin M York, Sagar D Khare, Enver Cagri Izgu

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. There's more to enzyme antagonism than inhibition.Bioorganic & medicinal chemistry · 2023
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Tushar AggarwalDepartment of Chemistry and Chemical Biology, Rutgers University, New Brunswick, New Jersey 08854, United States.ORCID 0000-0002-6641-0964
William A HansenInstitute for Quantitative Biomedicine, Rutgers University, New Brunswick, New Jersey 08854, United States.
Jonathan HongDepartment of Chemistry and Chemical Biology, Rutgers University, New Brunswick, New Jersey 08854, United States.
Abir GangulyInstitute for Quantitative Biomedicine, Rutgers University, New Brunswick, New Jersey 08854, United States.ORCID 0000-0002-0630-1109
Darrin M YorkDepartment of Chemistry and Chemical Biology, Rutgers University, New Brunswick, New Jersey 08854, United States.ORCID 0000-0002-9193-7055
Sagar D KhareDepartment of Chemistry and Chemical Biology, Rutgers University, New Brunswick, New Jersey 08854, United States.
Enver Cagri IzguDepartment of Chemistry and Chemical Biology, Rutgers University, New Brunswick, New Jersey 08854, United States.ORCID 0000-0001-6673-3635
Rutgers, The State University of New Jersey · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Multi-Scale Quantum Models for Ribozyme CatalysisR01GM062248 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Darrin M York · 2001 to 2026
$7.1M
Next-generation integrated quantum force fields for biomedical applicationsR01GM107485 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI Darrin M York · 2015 to 2026
$3.8M
Principles for Designing Stimulus-Responsive EnzymesR01GM132565 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI KHARE, SAGAR D · 2019 to 2022
$1.8M
Activity-Based Aptamers as Bioimaging Tools for Probing Organics, Inorganics, and EnzymesR21EB029548 · NIBIB · RUTGERS, THE STATE UNIV OF N.J. · PI IZGU, ENVER C · 2020 to 2021
$615k
NCI NIH HHS P30 CA072720NIBIB NIH HHS R21 EB029548NIGMS NIH HHS R01 GM062248NIGMS NIH HHS R01 GM107485NIGMS NIH HHS R01 GM132565
6 · The paper itself

Abstract

DNA polymerases have evolved to feature a highly conserved activity across the tree of life: formation of, without exception, internucleotidyl O-P linkages. Can this linkage selectivity be overcome by design to produce xenonucleic acids? Here, we report that the structure-guided redesign of an archaeal DNA polymerase, 9°N, exhibits a new activity undetectable in the wild-type enzyme: catalyzing the formation of internucleotidyl N-P linkages using 3'-NH

Indexed as

DNADNA-Directed DNA PolymeraseCatalytic DomainDNA, ArchaealDNA ReplicationDNADNA, ArchaealDNA-Directed DNA Polymerase

Identifiers

PMID35776893
PMCPMC9442636
OpenAlexW4283761856

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.