Evidence map›Paper›PMID 35776840›Full record

ArticleJournal of integrative bioinformatics2022

Design - a new way to look at old molecules.

Davide Spalvieri, Anne-Marine Mauviel, Matthieu Lambert, Nicolas Férey, Sophie Sacquin-Mora, Matthieu Chavent, Marc Baaden

Abstract read
In one paragraph

Article in Journal of integrative bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Davide SpalvieriLaboratoire de Biochimie Théorique, CNRS, Université Paris Cité, UPR 9080, 13 rue Pierre et Marie Curie, F-75005, Paris, France.
Anne-Marine MauvielLaboratoire de Biochimie Théorique, CNRS, Université Paris Cité, UPR 9080, 13 rue Pierre et Marie Curie, F-75005, Paris, France.
Matthieu LambertEcole Estienne, Paris, France.
Nicolas FéreyLaboratoire de Biochimie Théorique, CNRS, Université Paris Cité, UPR 9080, 13 rue Pierre et Marie Curie, F-75005, Paris, France.ORCID https://orcid.org/0000-0002-7713-001X
Sophie Sacquin-MoraLaboratoire de Biochimie Théorique, CNRS, Université Paris Cité, UPR 9080, 13 rue Pierre et Marie Curie, F-75005, Paris, France.
Matthieu ChaventInstitut de Pharmacologie et de Biologie Structurale, Université de Toulouse, CNRS, Université Paul Sabatier, 31400, Toulouse, France.
Marc BaadenLaboratoire de Biochimie Théorique, CNRS, Université Paris Cité, UPR 9080, 13 rue Pierre et Marie Curie, F-75005, Paris, France.ORCID https://orcid.org/0000-0001-6472-0486

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We discuss how design enriches molecular science, particularly structural biology and bioinformatics. We present two use cases, one in academic practice and the other to design for outreach. The first case targets the representation of ion channels and their dynamic properties. In the second, we document a transition process from a research environment to general-purpose designs. Several testimonials from practitioners are given. By describing the design process of abstracted shapes, exploded views of molecular structures, motion-averaged slices, 360-degree panoramic projections, and experiments with lit sphere shading, we document how designers help make scientific data accessible without betraying its meaning, and how a creative mind adds value over purely data-driven visualizations. A similar conclusion was drawn for public outreach, as we found that comic-book-style drawings are better suited for communicating science to a broad audience.

Indexed as

Molecular Biologyexploded viewsillustrationion channelsmolecular designoutreach

Identifiers

PMID35776840
PMCPMC9377703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.