Evidence map›Paper›PMID 35775490›Full record

ArticleThe Journal of clinical investigation2022

Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma.

Patrick C Lee, Susan Klaeger, Phuong M Le, Keegan Korthauer, Jingwei Cheng, Varsha Ananthapadmanabhan, Thomas C Frost, Jonathan D Stevens, Alan Yl Wong, J Bryan Iorgulescu and 36 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 29 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Efficacy of Immune Checkpoint Inhibitors and Oncoviruses in Solid Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 9 institutions in 3 countries.

Patrick C LeeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Susan KlaegerBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Phuong M LeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Keegan KorthauerDepartment of Statistics, University of British Columbia, Vancouver, British Columbia, Canada.
Jingwei ChengDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Varsha AnanthapadmanabhanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Thomas C FrostDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Jonathan D StevensDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Alan Yl WongDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
J Bryan IorgulescuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Anna Y TarrenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Vipheaviny A CheaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Isabel P CarulliDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Camilla K LemvighSection for Bioinformatics, Department of Health Technology, Technical University of Denmark, Lyngby, Denmark.
Christina B PedersenSection for Bioinformatics, Department of Health Technology, Technical University of Denmark, Lyngby, Denmark.
Ashley K GartinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Siranush SarkizovaBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Kyle T WrightDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Letitia W LiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Jason NomburgDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Shuqiang LiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Teddy HuangTranslational Immunogenomics Laboratory, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Xiaoxi LiuDepartment of Cancer Biology and the Linde Program in Cancer Chemical Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Lucas PomeranceDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Laura M DohertyDepartment of Cancer Biology and the Linde Program in Cancer Chemical Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Annie M ApffelBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Luke J WallaceBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Suzanna RachimiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Kristen D FeltCenter for Immuno-Oncology and.
Jacquelyn O WolffCenter for Immuno-Oncology and.
Elizabeth WittenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Wandi ZhangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Donna NeubergDepartment of Data Science, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
William J LaneHarvard Medical School, Boston, Massachusetts, USA.
Guanglan ZhangDepartment of Computer Science, Metropolitan College, Boston University, Boston, Massachusetts, USA.
Lars R OlsenSection for Bioinformatics, Department of Health Technology, Technical University of Denmark, Lyngby, Denmark.
Manisha ThakuriaHarvard Medical School, Boston, Massachusetts, USA.
Scott J RodigDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Karl R ClauserBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Gabriel J StarrettLaboratory of Cellular Oncology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, Maryland, USA.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Sara J BuhrlageDepartment of Cancer Biology and the Linde Program in Cancer Chemical Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Steven A CarrBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
James A DeCaprioDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Catherine J WuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Derin B KeskinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Broad Institute · USDana-Farber Cancer Institute · USBrigham and Women's Hospital · USHarvard University · USCopenhagen University Hospital · DKBoston University · USNational Cancer Institute · USTechnical University of Denmark · DKUniversity of British Columbia · CA

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI Irene M. Ghobrial · 1985 to 2026
$330.6M
Treating the P13-Kinase/AKTP50CA101942 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI David McDermott · 2003 to 2026
$53.4M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Cancer Immune Monitoring and Analysis CenterU24CA224331 · NCI · DANA-FARBER CANCER INST · PI FRANK S HODI, Catherine Ju-Ying Wu · 2017 to 2026
$18.4M
Training Program in Nervous System TumorsK12CA090354 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI PLOTKIN, SCOTT R · 2001 to 2025
$16.3M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
Personal tumor neoantigens for immunity against chronic lymphocytic leukemiaR01CA155010 · NCI · DANA-FARBER CANCER INST · PI Catherine Ju-Ying Wu · 2011 to 2026
$9.6M
PROJECT 4: Interrogating PP2A Signaling in Human CancersP01CA203655 · NCI · DANA-FARBER CANCER INST · PI DECAPRIO, JAMES A. · 2017 to 2021
$8.0M
The DREAM B-Myb-MuvB complex controls sensitivity to DNA replication activators and inhibitorsR35CA232128 · NCI · DANA-FARBER CANCER INST · PI DECAPRIO, JAMES A. · 2019 to 2025
$7.2M
MICROSCALED PROTEOGENOMICS FOR CANCER CLINICAL TRIALSU01CA214125 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ANURAG, MEENAKSHI, CARR, STEVEN A · 2017 to 2021
$7.0M
Center of Excellence for High Throughput Proteogenomic CharacterizationU24CA210986 · NCI · BROAD INSTITUTE, INC. · PI CARR, STEVEN A, GILLETTE, MICHAEL A · 2016 to 2020
$6.4M
NCI NIH HHS K12 CA090354NCI NIH HHS P01 CA203655NCI NIH HHS P30 CA006516NCI NIH HHS P50 CA101942NCI NIH HHS R01 CA155010NCI NIH HHS R01 CA173023NCI NIH HHS R21 CA216772NCI NIH HHS R35 CA232128NCI NIH HHS R50 CA243777NCI NIH HHS R50 CA251956NCI NIH HHS U01 CA214125NCI NIH HHS U24 CA210986NCI NIH HHS U24 CA224331NCI NIH HHS U24 CA270823NHGRI NIH HHS T32 HG002295NHLBI NIH HHS R01 HL131768NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM144273
6 · The paper itself

Abstract

Cancers avoid immune surveillance through an array of mechanisms, including perturbation of HLA class I antigen presentation. Merkel cell carcinoma (MCC) is an aggressive, HLA-I-low, neuroendocrine carcinoma of the skin often caused by the Merkel cell polyomavirus (MCPyV). Through the characterization of 11 newly generated MCC patient-derived cell lines, we identified transcriptional suppression of several class I antigen presentation genes. To systematically identify regulators of HLA-I loss in MCC, we performed parallel, genome-scale, gain- and loss-of-function screens in a patient-derived MCPyV-positive cell line and identified MYCL and the non-canonical Polycomb repressive complex 1.1 (PRC1.1) as HLA-I repressors. We observed physical interaction of MYCL with the MCPyV small T viral antigen, supporting a mechanism of virally mediated HLA-I suppression. We further identify the PRC1.1 component USP7 as a pharmacologic target to restore HLA-I expression in MCC.

Indexed as

Carcinoma, Merkel CellMerkel cell polyomavirusPolyomavirus InfectionsSkin NeoplasmsAntigens, Viral, TumorEpigenesis, GeneticHumansUbiquitin-Specific Peptidase 7Antigens, Viral, TumorUbiquitin-Specific Peptidase 7USP7 protein, humanMHC class 1OncologyProteomicsSkin cancer

Identifiers

PMID35775490
PMCPMC9246387
OpenAlexW4283715614

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.