Evidence map›Paper›PMID 35775031›Full record

ArticleProceedings of the ACM on programming languages2019

Seq: A High-Performance Language for Bioinformatics.

Ariya Shajii, Ibrahim Numanagić, Riyadh Baghdadi, Bonnie Berger, Saman Amarasinghe, MIT CSAIL, USA

Open access · diamondAbstract read
In one paragraph

Article in Proceedings of the ACM on programming languages, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ariya ShajiiMIT CSAIL, 77 Massachusetts Ave, Cambridge, MA, 02139, USA.
Ibrahim NumanagićMIT CSAIL, 77 Massachusetts Ave, Cambridge, MA, 02139, USA.
Riyadh BaghdadiMIT CSAIL, 77 Massachusetts Ave, Cambridge, MA, 02139, USA.
Bonnie BergerMIT CSAIL, 77 Massachusetts Ave, Cambridge, MA, 02139, USA.
Saman AmarasingheMIT CSAIL, 77 Massachusetts Ave, Cambridge, MA, 02139, USA.
MIT CSAIL, USA
Massachusetts Institute of Technology · US

Funding

Privacy-preserving genomic medicine at scaleR01HG010959 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERGER, BONNIE · 2020 to 2023
$2.6M
NHGRI NIH HHS R01 HG010959
6 · The paper itself

Abstract

The scope and scale of biological data are increasing at an exponential rate, as technologies like next-generation sequencing are becoming radically cheaper and more prevalent. Over the last two decades, the cost of sequencing a genome has dropped from $100 million to nearly $100-a factor of over 10

Indexed as

bioinformaticscomputational biologydomain-specific languageoptimizationprogramming languagePython

Identifiers

PMID35775031
PMCPMC9241673
OpenAlexW2979985440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.