Evidence map›Paper›PMID 35774513›Full record

ArticleFrontiers in genetics2022

Identification of QTNs Associated With Flowering Time, Maturity, and Plant Height Traits in

Ankit Saroha, Deepa Pal, Sunil S Gomashe, Akash, Vikender Kaur, Shraddha Ujjainwal, S Rajkumar, J Aravind, J Radhamani, Rajesh Kumar and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. History and prospects of flax genetic markers.Frontiers in plant science · 2024
    Review
  9. Article
  10. Diversity ofFrontiers in nutrition · 2023
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Ankit SarohaDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Deepa PalDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Sunil S GomasheICAR-National Bureau of Plant Genetic Resources, Regional Station Akola, Maharashtra, India.
AkashDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Vikender KaurDivision of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
Shraddha UjjainwalDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
S RajkumarDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
J AravindDivision of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
J RadhamaniDivision of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
Rajesh KumarDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Dinesh ChandICAR-National Bureau of Plant Genetic Resources, Regional Station Akola, Maharashtra, India.
Abhishek SenguptaAmity Institute of Biotechnology, Amity University, Noida, India.
Dhammaprakash Pandhari WankhedeDivision of Genomic Resources, Indian Council of Agricultural Research (ICAR)-National Bureau of Plant Genetic Resources, New Delhi, India.
Indian Council of Agricultural Research · INNational Bureau of Plant Genetic Resources · INAmity University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early flowering, maturity, and plant height are important traits for linseed to fit in rice fallows, for rainfed agriculture, and for economically viable cultivation. Here, Multi-Locus Genome-Wide Association Study (ML-GWAS) was undertaken in an association mapping panel of 131 accessions, genotyped using 68,925 SNPs identified by genotyping by sequencing approach. Phenotypic evaluation data of five environments comprising 3 years and two locations were used. GWAS was performed for three flowering time traits including days to 5%, 50%, and 95% flowering, days to maturity, and plant height by employing five ML-GWAS methods: FASTmrEMMA, FASTmrMLM, ISIS EM-BLASSO, mrMLM, and pLARmEB. A total of 335 unique QTNs have been identified for five traits across five environments. 109 QTNs were stable as observed in ≥2 methods and/or environments, explaining up to 36.6% phenotypic variance. For three flowering time traits, days to maturity, and plant height, 53, 30, and 27 stable QTNs, respectively, were identified. Candidate genes having roles in flower, pollen, embryo, seed and fruit development, and xylem/phloem histogenesis have been identified. Gene expression of candidate genes for flowering and plant height were studied using transcriptome of an early maturing variety

Indexed as

flaxseedflowering timelinseedmaturitymulti-locus GWASplant heightquantitative trait nucleotides

Identifiers

PMID35774513
PMCPMC9237403
OpenAlexW4282927555

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.