Evidence map›Paper›PMID 35774156›Full record

ArticleChemical science2022

Parallel imaging of coagulation pathway proteases activated protein C, thrombin, and factor Xa in human plasma.

Sylwia Modrzycka, Sonia Kołt, Stéphanie G I Polderdijk, Ty E Adams, Stanisław Potoczek, James A Huntington, Paulina Kasperkiewicz, Marcin Drąg

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Non-Canonical Amino Acids in Analyses of Protease Structure and Function.International journal of molecular sciences · 2023
    Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Sylwia ModrzyckaDepartment of Chemical Biology and Bioimaging, Faculty of Chemistry, Wrocław University of Science and Technology Wybrzeże Wyspiańskiego 27 50-370 Wrocław Poland marcin.drag@pwr.edu.pl sylwia.modrzycka@pwr.edu.pl sonia.kolt133@gmail.com paulina.kasperkiewicz@pwr.edu.pl.
Sonia KołtDepartment of Chemical Biology and Bioimaging, Faculty of Chemistry, Wrocław University of Science and Technology Wybrzeże Wyspiańskiego 27 50-370 Wrocław Poland marcin.drag@pwr.edu.pl sylwia.modrzycka@pwr.edu.pl sonia.kolt133@gmail.com paulina.kasperkiewicz@pwr.edu.pl.
Stéphanie G I PolderdijkDepartment of Haematology, Cambridge Institute for Medical Research, University of Cambridge The Keith Peters Building, Hills Road Cambridge CB2 0XY UK stephanie.polderdijk@cantab.net tea22@cam.ac.uk jah52@cam.ac.uk.
Ty E AdamsDepartment of Haematology, Cambridge Institute for Medical Research, University of Cambridge The Keith Peters Building, Hills Road Cambridge CB2 0XY UK stephanie.polderdijk@cantab.net tea22@cam.ac.uk jah52@cam.ac.uk.
Stanisław PotoczekDepartment of Haematology, Blood Neoplasms, and Bone Marrow Transplantation, Wrocław Medical University Pasteura 1 50-367 Wrocław Poland stanislaw.potoczek@umw.edu.pl.
James A HuntingtonDepartment of Haematology, Cambridge Institute for Medical Research, University of Cambridge The Keith Peters Building, Hills Road Cambridge CB2 0XY UK stephanie.polderdijk@cantab.net tea22@cam.ac.uk jah52@cam.ac.uk.
Paulina KasperkiewiczDepartment of Chemical Biology and Bioimaging, Faculty of Chemistry, Wrocław University of Science and Technology Wybrzeże Wyspiańskiego 27 50-370 Wrocław Poland marcin.drag@pwr.edu.pl sylwia.modrzycka@pwr.edu.pl sonia.kolt133@gmail.com paulina.kasperkiewicz@pwr.edu.pl.ORCID https://orcid.org/0000-0002-1291-047X
Marcin DrągDepartment of Chemical Biology and Bioimaging, Faculty of Chemistry, Wrocław University of Science and Technology Wybrzeże Wyspiańskiego 27 50-370 Wrocław Poland marcin.drag@pwr.edu.pl sylwia.modrzycka@pwr.edu.pl sonia.kolt133@gmail.com paulina.kasperkiewicz@pwr.edu.pl.ORCID https://orcid.org/0000-0001-8510-1967
Wrocław University of Science and Technology · PLUniversity of Cambridge · GBWroclaw Medical University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activated protein C (APC), thrombin, and factor (f) Xa are vitamin K-dependent serine proteases that are key factors in blood coagulation. Moreover, they play important roles in inflammation, apoptosis, fibrosis, angiogenesis, and viral infections. Abnormal activity of these coagulation factors has been related to multiple conditions, such as bleeding and thrombosis, Alzheimer's disease, sepsis, multiple sclerosis, and COVID-19. The individual activities of APC, thrombin, and fXa in coagulation and in various diseases are difficult to establish since these proteases are related and have similar substrate preferences. Therefore, the development of selective chemical tools that enable imaging and discrimination between coagulation factors in biological samples may provide better insight into their roles in various conditions and potentially aid in the establishment of novel diagnostic tests. In our study, we used a large collection of unnatural amino acids, and this enabled us to extensively explore the binding pockets of the enzymes' active sites. Based on the specificity profiles obtained, we designed highly selective substrates, inhibitors, and fluorescent activity-based probes (ABPs) that were used for fast, direct, and simultaneous detection of APC, thrombin, and fXa in human plasma.

Identifiers

PMID35774156
PMCPMC9200056
OpenAlexW4283767676

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.