Evidence map›Paper›PMID 35768837›Full record

ArticleBMC veterinary research2022

Long read sequencing revealed proventricular virome of broiler chicken with transmission viral proventriculitis.

Tianxing Yan, Gen Li, Defang Zhou, Liping Hu, Xiaojing Hao, Ruiqi Li, Guihua Wang, Ziqiang Cheng

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Molecular Characterization of EmergingInternational journal of molecular sciences · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Gyrovirus: current status and challenge.Frontiers in microbiology · 2024
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Tianxing Yan *Present Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China.
Gen Li *Present Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China.
Defang ZhouPresent Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China.
Liping HuAnimal Epidemic Prevention and Control Center of Shandong Province, Jinan, China.
Xiaojing HaoAnimal Husbandry and Veterinary Research Institute of Qingdao, Qingdao, China.
Ruiqi LiPresent Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China.
Guihua WangPresent Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China.
Ziqiang ChengPresent Address: College of Veterinary Medicine, Shandong Agricultural University, Shandong Provence, Tai'an, 271018, China. czqsd@126.com.
Shandong Agricultural University · CNQingdao Institute of Animal Husbandry and Veterinary Medicine · CNShandong Center for Disease Control and Prevention · CN

Funding

Modern Agricultural Technology Industry System of Shandong province SDAIT-11-04Shandong Science and Technology Development Project 2019JZZY010735
6 · The paper itself

Abstract

backgroundTransmissible viral proventriculitis (TVP) causes significant economic loss to the poultry industry. However, the exact causative agents are obscure. Here we examine the virome of proventriculus from specified pathogen free (SPF) chickens that reproduced by infection of proventricular homogenate from broiler chicken with TVP using long read sequencing of the Pacific Biosciences RSII platform. The normal SPF chickens were used as control.

resultsOur investigation reveals a virome of proventriculitis, including three Gyrovirus genera of the Aneloviridae: Gyrovirus homsa1 (GyH1) (also known as Gyrovirus 3, GyV3) (n = 2662), chicken anemia virus (CAV) (n = 482) and Gyrovirus galga1 (GyG1) (also known as avian Gyrovirus 2, AGV2) (n = 11); a plethora of novel CRESS viral genomes (n = 26) and a novel genomovirus. The 27 novel viruses were divided into three clusters. Phylogenetic analysis showed that the GyH1 strain was more closely related to the strains from chicken (MG366592) than mammalian (human and cat), the GyG1 strain was closely related to the strains from cat in China (MK089245) and from chicken in Brazil (HM590588), and the CAV strain was more closely related to the strains from Germany (AJ297684) and United Kingdom (U66304) than that previously found in China.

conclusionIn this study, we revealed that Gyrovirus virome showed high abundance in chickens with TVP, suggesting their potential role in TVP, especially GyH1. This study is expected to contribute to the knowledge of the etiology of TVP.

Indexed as

Chicken anemia virusGyrovirusPoultry DiseasesStomach DiseasesAnimalsChickensMammalsPhylogenyProventriculusViromeGyrovirusNovel CRESS virusPacific Biosciences RSII platformTransmissible viral proventriculitisVirome

Identifiers

PMID35768837
PMCPMC9241223
OpenAlexW4283693866

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.