Evidence map›Paper›PMID 35768404›Full record

ArticleNature communications2022

Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology.

Carolyn E Mills, Curt Waltmann, Andre G Archer, Nolan W Kennedy, Charlotte H Abrahamson, Alexander D Jackson, Eric W Roth, Sasha Shirman, Michael C Jewett, Niall M Mangan and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Mechanistic insights into lenacapavir-induced off-pathway HIV-1 capsid assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Electrochemical cofactor recycling of bacterial microcompartments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Carolyn E MillsDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.
Curt WaltmannDepartment of Materials Science and Engineering, Northwestern University, Evanston, IL, USA.
Andre G ArcherDepartment of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, IL, USA.
Nolan W KennedyInterdisciplinary Biological Sciences Program, Northwestern University, Evanston, IL, USA.
Charlotte H AbrahamsonDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.
Alexander D JacksonMaster of Science in Biotechnology Program, Northwestern University, Evanston, IL, USA.
Eric W RothNorthwestern University Atomic and Nanoscale Characterization Experimental Center, Evanston, IL, USA.
Sasha ShirmanDepartment of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, IL, USA.
Michael C JewettDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0003-2948-6211
Niall M ManganDepartment of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, IL, USA.
Monica Olvera de la CruzDepartment of Materials Science and Engineering, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0002-9802-3627
Danielle Tullman-ErcekDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA. ercek@northwestern.edu.ORCID http://orcid.org/0000-0001-6734-480X

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Developing Capacity to Evaluate Training Programs via Development of Human, Institutional and Social CapitalT32GM008449 · NIGMS · NORTHWESTERN UNIVERSITY · PI LEONARD, JOSHUA NATHANIEL · 1993 to 2023
$7.8M
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS T32 GM008449
6 · The paper itself

Abstract

Engineering subcellular organization in microbes shows great promise in addressing bottlenecks in metabolic engineering efforts; however, rules guiding selection of an organization strategy or platform are lacking. Here, we study compartment morphology as a factor in mediating encapsulated pathway performance. Using the 1,2-propanediol utilization microcompartment (Pdu MCP) system from Salmonella enterica serovar Typhimurium LT2, we find that we can shift the morphology of this protein nanoreactor from polyhedral to tubular by removing vertex protein PduN. Analysis of the metabolic function between these Pdu microtubes (MTs) shows that they provide a diffusional barrier capable of shielding the cytosol from a toxic pathway intermediate, similar to native MCPs. However, kinetic modeling suggests that the different surface area to volume ratios of MCP and MT structures alters encapsulated pathway performance. Finally, we report a microscopy-based assay that permits rapid assessment of Pdu MT formation to enable future engineering efforts on these structures.

Indexed as

Bacterial ProteinsSalmonella typhimuriumMetabolic EngineeringPropylene GlycolBacterial ProteinsPropylene Glycol

Identifiers

PMID35768404
PMCPMC9243111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.