Evidence map›Paper›PMID 35767643›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Bacteriophages evolve enhanced persistence to a mucosal surface.

Wai Hoe Chin, Ciaren Kett, Oren Cooper, Deike Müseler, Yaqi Zhang, Rebecca S Bamert, Ruzeen Patwa, Laura C Woods, Citsabehsan Devendran, Denis Korneev and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
  2. Characterization ofMicrobiology spectrum · 2026
    Article
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  4. Article
  5. Review
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  7. Article
  8. Review
  9. Article
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  11. Review
  12. Journal of virology · 2025
    Article
  13. Review
  14. Identification and characterization ofMicrobiology spectrum · 2025
    Article
  15. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Wai Hoe ChinSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0003-1487-0974
Ciaren KettSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0002-7461-0376
Oren CooperInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia.
Deike MüselerDepartment of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0002-7999-7573
Yaqi ZhangDepartment of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0001-8619-5942
Rebecca S BamertInfection and Immunity Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0001-7685-713X
Ruzeen PatwaSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.
Laura C WoodsSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0003-4525-4760
Citsabehsan DevendranDepartment of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0002-7043-933X
Denis KorneevDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0003-4350-8317
Joe TiralongoInstitute for Glycomics, Griffith University, Gold Coast, QLD 4222, Australia.
Trevor LithgowInfection and Immunity Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0002-0102-7884
Michael J McDonaldSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0002-5735-960X
Adrian NeildDepartment of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia.
Jeremy J BarrSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.ORCID 0000-0001-5603-5294

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of viruses within the gut are obligate bacterial viruses known as bacteriophages (phages). Their bacteriotropism underscores the study of phage ecology in the gut, where they modulate and coevolve with gut bacterial communities. Traditionally, these ecological and evolutionary questions were investigated empirically via in vitro experimental evolution and, more recently, in vivo models were adopted to account for physiologically relevant conditions of the gut. Here, we probed beyond conventional phage-bacteria coevolution to investigate potential tripartite evolutionary interactions between phages, their bacterial hosts, and the mammalian gut mucosa. To capture the role of the mammalian gut, we recapitulated a life-like gut mucosal layer using in vitro lab-on-a-chip devices (to wit, the gut-on-a-chip) and showed that the mucosal environment supports stable phage-bacteria coexistence. Next, we experimentally coevolved lytic phage populations within the gut-on-a-chip devices alongside their bacterial hosts. We found that while phages adapt to the mucosal environment via de novo mutations, genetic recombination was the key evolutionary force in driving mutational fitness. A single mutation in the phage capsid protein Hoc-known to facilitate phage adherence to mucus-caused altered phage binding to fucosylated mucin glycans. We demonstrated that the altered glycan-binding phenotype provided the evolved mutant phage a competitive fitness advantage over its ancestral wild-type phage in the gut-on-a-chip mucosal environment. Collectively, our findings revealed that phages-in addition to their evolutionary relationship with bacteria-are able to evolve in response to a mammalian-derived mucosal environment.

Indexed as

BacteriaBacteriophagesGastrointestinal TractMucous MembraneAnimalsCapsid ProteinsMucusMutationSymbiosisCapsid Proteinsevolutionlab-on-a-chipmucussymbiosisvirus

Identifiers

PMID35767643
PMCPMC9271167

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.