Evidence map›Paper›PMID 35766497›Full record

ArticleMicrobiology spectrum2022

Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda.

Bailey Lubinski, Laura E Frazier, My V T Phan, Daniel L Bugembe, Jessie L Cunningham, Tiffany Tang, Susan Daniel, Matthew Cotten, Javier A Jaimes, Gary R Whittaker

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 49 citations in OpenAlex.

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  11. Fibrinolytic system and COVID-19: From an innovative view of epithelial ion transport.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2023
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Bailey Lubinski *Graduate Program in Biological & Biomedical Sciences, Cornell Universitygrid.5386.8, Ithaca, New York, USA.
Laura E Frazier *Graduate Program in Biological & Biomedical Sciences, Cornell Universitygrid.5386.8, Ithaca, New York, USA.
My V T PhanMRC/UVRI and London School of Hygiene and Tropical Medicine - Uganda Research Unit, Entebbe, Uganda.
Daniel L BugembeMRC/UVRI and London School of Hygiene and Tropical Medicine - Uganda Research Unit, Entebbe, Uganda.
Jessie L CunninghamGraduate Program in Biological & Biomedical Sciences, Cornell Universitygrid.5386.8, Ithaca, New York, USA.
Tiffany TangRobert Frederick Smith School of Chemical and Biomolecular Engineering, Cornell Universitygrid.5386.8, Ithaca, New York, USA.
Susan DanielRobert Frederick Smith School of Chemical and Biomolecular Engineering, Cornell Universitygrid.5386.8, Ithaca, New York, USA.
Matthew CottenMRC/UVRI and London School of Hygiene and Tropical Medicine - Uganda Research Unit, Entebbe, Uganda.
Javier A JaimesDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell Universitygrid.5386.8, Ithaca, New York, USA.ORCID 0000-0001-6706-092X
Gary R WhittakerDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell Universitygrid.5386.8, Ithaca, New York, USA.ORCID 0000-0001-8037-3816
Cornell University · USUganda Virus Research Institute · UGMRC University of Glasgow Centre for Virus Research · GB

Funding

Medical Research Council MC_PC_19026Medical Research Council MC_PC_20010
6 · The paper itself

Abstract

Based on its predicted ability to affect transmissibility and pathogenesis, surveillance studies have highlighted the role of a specific mutation (P681R) in the S1/S2 furin cleavage site of the SARS-CoV-2 spike protein. Here we analyzed A.23.1, first identified in Uganda, as a P681R-containing virus several months prior to the emergence of B.1.617.2 (Delta variant). We performed assays using peptides mimicking the S1/S2 from A.23.1 and B.1.617 and observed significantly increased cleavability with furin compared to both an original B lineage (Wuhan-Hu1) and B.1.1.7 (Alpha variant). We also performed cell-cell fusion and functional infectivity assays using pseudotyped particles and observed an increase in activity for A.23.1 compared to an original B lineage spike. However, these changes in activity were not reproduced in the B lineage spike bearing only the P681R substitution. Our findings suggest that while A.23.1 has increased furin-mediated cleavage linked to the P681R substitution, this substitution needs to occur on the background of other spike protein changes to enable its functional consequences.

Indexed as

COVID-19SARS-CoV-2Spike Glycoprotein, CoronavirusFurinHumansMutationUgandaFurinSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2A.23.1P681R mutationSARS-CoV-2spikeUganda

Identifiers

PMID35766497
PMCPMC9430374
OpenAlexW4283724864

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.