Evidence map›Paper›PMID 35765184›Full record

ArticleMicrobiologyOpen2022

A comparative study of the fecal microbiota of gray seal pups and yearlings - a marine mammal sentinel species.

Craig A Watkins, Taylor Gaines, Fiona Strathdee, Johanna L Baily, Eleanor Watson, Ailsa J Hall, Andrew Free, Mark P Dagleish

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Craig A WatkinsDepartment of Vaccines and Diagnostics, Moredun Research Institute, Penicuik, UK.ORCID 0000-0002-9965-173X
Taylor GainesDepartment of Vaccines and Diagnostics, Moredun Research Institute, Penicuik, UK.
Fiona StrathdeeSchool of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Johanna L BailyDepartment of Vaccines and Diagnostics, Moredun Research Institute, Penicuik, UK.
Eleanor WatsonDepartment of Vaccines and Diagnostics, Moredun Research Institute, Penicuik, UK.
Ailsa J HallSea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, St Andrews, UK.
Andrew FreeSchool of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Mark P DagleishDepartment of Vaccines and Diagnostics, Moredun Research Institute, Penicuik, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/J004243/1Medical Research Council MR/K001744/1
6 · The paper itself

Abstract

Gray seals (Halichoerus grypus) can act as sentinel species reflecting the condition of the environment they inhabit. Our previous research identified strains of pathogenic Campylobacter and Salmonella, originating from both human and agricultural animal hosts, on rectal swabs from live gray seal (H. grypus) pups and yearlings on the Isle of May, Scotland, UK. We examined rectal swabs from the same pup (n = 90) and yearling (n = 19) gray seals to gain further understanding into the effects of age-related changes (pup vs. yearling) and three different natal terrestrial habitats on seal pup fecal microbiota. DNA was extracted from a subset of rectal swabs (pups n = 23, yearlings n = 9) using an optimized procedure, and the V4 region of the 16S ribosomal RNA gene was sequenced to identify each individual's microbiota. Diversity in pup samples was lower (3.92 ± 0.19) than yearlings (4.66 ± 0.39) although not significant at the p = 0.05 level (p = 0.062) but differences in the composition of the microbiota were (p < 0.001). Similarly, differences between the composition of the microbiota from pups from three different terrestrial habitats (Pilgrim's Haven [PH], Rona Rocks [RR], and Tarbet Slope [TS]) were highly significant (p < 0.001). Pairwise tests showed significant differences between all three habitats: PH versus TS (p = 0.019), PH versus RR (p = 0.042) and TS versus RR (p = 0.020). This preliminary study suggests a general trend, that seal microbiomes are modified by both age and, in pups, different terrestrial habitats. Furthermore, knowledge of the microbiota species present has the potential to be used in determining the environmental quality index.

Indexed as

MicrobiotaSeals, EarlessAnimalsFecesRNA, Ribosomal, 16SSentinel SpeciesRNA, Ribosomal, 16Sfecal microbiotagray sealpupsyearlings

Identifiers

PMID35765184
PMCPMC9126079

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.