Evidence map›Paper›PMID 35765079›Full record

ArticleGenome biology2022

Storing and analyzing a genome on a blockchain.

Gamze Gürsoy, Charlotte M Brannon, Eric Ni, Sarah Wagner, Amol Khanna, Mark Gerstein

Abstract read
In one paragraph

Article in Genome biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Integrating population-based biobanks: Catalyst for advances in precision health.Computational and structural biotechnology journal · 2024
    Article
  8. Article
  9. Article
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  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gamze GürsoyProgram in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
Charlotte M BrannonProgram in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
Eric NiProgram in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.
Sarah WagnerDepartment of Computer Science, Yale University, Prospect Street, New Haven, CT, 06520, USA.
Amol KhannaDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA. mark@gersteinlab.org.ORCID 0000-0002-9746-3719

Funding

Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservationR01HG010749 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER · 2020 to 2024
$2.6M
Realistic quantification of potential privacy loss from genomic summary resultsR00HG010909 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GURSOY, GAMZE · 2022 to 2024
$727k
NHGRI NIH HHS R00 HG010909NHGRI NIH HHS R00HG010909NHGRI NIH HHS R01 HG010749NHGRI NIH HHS R01HG010749
6 · The paper itself

Abstract

There are major efforts underway to make genome sequencing a routine part of clinical practice. A critical barrier to these is achieving practical solutions for data ownership and integrity. Blockchain provides solutions to these challenges in other realms, such as finance. However, its use in genomics is stymied due to the difficulty in storing large-scale data on-chain, slow transaction speeds, and limitations on querying. To overcome these roadblocks, we developed a private blockchain network to store genomic variants and reference-aligned reads on-chain. It uses nested database indexing with an accompanying tool suite to rapidly access and analyze the data.

Indexed as

BlockchainGenomeGenomicsBlockchainBlockchain databaseMultichainPersonal genome

Identifiers

PMID35765079
PMCPMC9241283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.