Evidence map›Paper›PMID 35764948›Full record

ArticleBMC infectious diseases2022

Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment.

Si-Jie Wang, Li-Na Chen, Song-Mei Wang, Hong-Lu Zhou, Chao Qiu, Baoming Jiang, Tian-Yi Qiu, Sheng-Li Chen, Lorenz von Seidlein, Xuan-Yi Wang

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Si-Jie Wang *Shanghai Institute of Infectious Disease and Biosecurity, and Institutes of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China.
Li-Na Chen *Key Laboratory of Medical Molecular Virology of MoE & MoH, Fudan University, Shanghai, People's Republic of China.
Song-Mei Wang *Laboratory of Molecular Biology, Training Center of Medical Experiments, School of Basic Medical Sciences, Fudan University, Shanghai, People's Republic of China.
Hong-Lu ZhouShanghai Institute of Infectious Disease and Biosecurity, and Institutes of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China.
Chao QiuShanghai Institute of Infectious Disease and Biosecurity, and Institutes of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China.
Baoming JiangViral Gastroenteritis Branch, Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Tian-Yi QiuZhongshan Hospital, Shanghai Public Health Clinical Center, Fudan University, Shanghai, People's Republic of China. ty_qiu@126.com.
Sheng-Li ChenPediatric Center, Zhujiang Hospital, Southern Medical University, 253 Industrial Avenue Central, Guangzhou, People's Republic of China. 2312745315@qq.com.
Lorenz von SeidleinMahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Xuan-Yi WangShanghai Institute of Infectious Disease and Biosecurity, and Institutes of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China. xywang@shmu.edu.cn.
Fudan University · CNCenters for Disease Control and Prevention · USChildren's Hospital of Fudan University · CNMahidol Oxford Tropical Medicine Research Unit · THShanghai Public Health Clinical Center · CNZhujiang Hospital · CN

Funding

National Science and Technology Major Project 2018ZX09739002-006
6 · The paper itself

Abstract

backgroundThe G8 rotavirus genotype has been detected frequently in children in many countries and even became the predominant strain in sub-Saharan African countries, while there are currently no reports from China. In this study we described the genetic characteristics and evolutionary relationship between rotavirus strains from Guangzhou in China and the epidemic rotavirus strains derived from GenBank, 2020-2021.

methodsVirus isolation and subsequent next-generation sequencing were performed for confirmed G8P[8] specimens. The genetic characteristics and evolutionary relationship were analyzed in comparison with epidemic rotavirus sequences obtained from GenBank.

resultsThe two Guangzhou G8 strains were DS-1-like with the closest genetic distance to strains circulating in Southeast Asia. The VP7 genes of the two strains were derived from a human, not an animal G8 rotavirus. Large genetic distances in several genes suggested that the Guangzhou strains may not have been transmitted directly from Southeast Asian countries, but have emerged following reassortment events.

conclusionsWe report the whole genome sequence information of G8P[8] rotaviruses recently detected in China; their clinical and epidemiological significance remains to be explored further.

Indexed as

RotavirusRotavirus InfectionsAnimalsGenome, ViralGenotypePhylogenyChinaEmergenceGastroenteritisGenotypingRotavirus

Identifiers

PMID35764948
PMCPMC9238253
OpenAlexW4283655802

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.