Evidence map›Paper›PMID 35764832›Full record

ArticleBiometals : an international journal on the role of metal ions in biology, biochemistry, and medicine2022

Mitochondrial iron transporter (MIT) gene in potato (Solanum tuberosum): comparative bioinformatics, physiological and expression analyses in response to drought and salinity.

Firat Kurt, Baris Kurt, Ertugrul Filiz, Kubra Yildiz, M Aydın Akbudak

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Article in Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

Firat KurtFaculty of Applied Sciences, Plant Production and Technologies, Mus Alparslan University, Muş, Turkey.
Baris KurtDepartment of Mathematics, Faculty of Education, Mus Alparslan University, Muş, Turkey.
Ertugrul FilizDepartment of Crop and Animal Production, Cilimli Vocational School, Duzce University, Cilimli, Duzce, Turkey. ertugrulfiliz@gmail.com.
Kubra YildizDepartment of Agricultural Biotechnology, Akdeniz University, Antalya, Turkey.
M Aydın AkbudakDepartment of Agricultural Biotechnology, Akdeniz University, Antalya, Turkey. akbudak@akdeniz.edu.tr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial iron transporter (MIT) genes are essential for mitochondrial acquisition/import of iron and vital to proper functioning of mitochondria. Unlike other organisms, research on the MITs in plants is limited. The present study provides comparative bioinformatics assays for the potato MIT gene (StMIT) as well as gene expression analyses. The phylogenetic analyses revealed monocots-dicot divergence in MIT proteins and it was also found clade specific motif diversity. In addition, docking analyses indicated that Asp172 and Gly100 residues to be identified as the closest residues binding to ferrous iron. The percentage of structure overlap of the StMIT 3D protein model with Arabidopsis, maize and rice MIT proteins was found between 80.18% and 85.71%. The transcript analyses exhibited that the expression of StMIT was triggered under drought and salinity stresses. The findings of the present study would provide valuable leads for further studies targeting specifically the MIT gene and generally the plant iron metabolism.

Indexed as

ArabidopsisSolanum tuberosumComputational BiologyDroughtsGene Expression Regulation, PlantIronMembrane Transport ProteinsPhylogenyPlant ProteinsPlantsSalinityStress, PhysiologicalIronMembrane Transport ProteinsPlant ProteinsIn silico analysesIron homeostasisMitochondrial carrier familyMitoferrin

Identifiers

PMID35764832

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.