Evidence map›Paper›PMID 35764640›Full record

ArticleNature communications2022

The genomic basis of the plant island syndrome in Darwin's giant daisies.

José Cerca, Bent Petersen, José Miguel Lazaro-Guevara, Angel Rivera-Colón, Siri Birkeland, Joel Vizueta, Siyu Li, Qionghou Li, João Loureiro, Chatchai Kosawang and 19 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome research · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 15 institutions in 11 countries.

José CercaDepartment of Natural History, NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway. jose.cerca@gmail.com.ORCID http://orcid.org/0000-0001-7788-4367
Bent PetersenCentre for Evolutionary Hologenomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5, 1353, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-2472-8317
José Miguel Lazaro-GuevaraDepartment of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.ORCID http://orcid.org/0000-0003-0741-4225
Angel Rivera-ColónDepartment of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Champaign, IL, USA.ORCID http://orcid.org/0000-0001-9097-3241
Siri BirkelandDepartment of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.
Joel VizuetaVillum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen, Denmark.ORCID http://orcid.org/0000-0003-0139-3013
Siyu LiDepartment of Plant Biology, University of California, Davis, Davis, CA, 95616, USA.
Qionghou LiDepartment of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
João LoureiroCentre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-095, Coimbra, Portugal.
Chatchai KosawangDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958, Frederiksberg C, Denmark.
Patricia Jaramillo DíazEstación Científica Charles Darwin, Fundación Charles Darwin, Santa Cruz, Galápagos, Ecuador.
Gonzalo Rivas-TorresColegio de Ciencias Biológicas y Ambientales COCIBA & Extensión Galápagos, Universidad San Francisco de Quito USFQ, Quito, 170901, Ecuador.
Mario Fernández-MazuecosDepartamento de Biología, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
Pablo VargasDepartamento de Biodiversidad y Conservación, Real Jardín Botánico (RJB-CSIC), Plaza de Murillo 2, 28014, Madrid, Spain.
Ross A McCauleyDepartment of Biology, Fort Lewis College, Durango, CO, 81301, USA.
Gitte PetersenDepartment of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91, Stockholm, Sweden.
Luisa Santos-BayCentre for Evolutionary Hologenomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5, 1353, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-0554-6550
Nathan WalesDepartment of Archaeology, University of York, York, UK.
Julian M CatchenDepartment of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Champaign, IL, USA.ORCID http://orcid.org/0000-0002-4798-660X
Daniel MachadoDepartment of Biotechnology and Food Science, Norwegian University of Science and Technology, Trondheim, 7491, Norway.
Michael D NowakNatural History Museum, University of Oslo, Oslo, Norway.
Alexander SuhSchool of Biological Sciences, University of East Anglia, Norwich Research Park, NR4 7TU, Norwich, UK.ORCID http://orcid.org/0000-0002-8979-9992
Neelima R SinhaDepartment of Plant Biology, University of California, Davis, Davis, CA, 95616, USA.ORCID http://orcid.org/0000-0002-1494-7065
Lene R NielsenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958, Frederiksberg C, Denmark.ORCID http://orcid.org/0000-0002-7214-8691
Ole SebergThe Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-9675-4090
M Thomas P GilbertDepartment of Natural History, NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway.
James H Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Loren H RiesebergDepartment of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
Michael D MartinDepartment of Natural History, NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway. mike.martin@ntnu.no.ORCID http://orcid.org/0000-0002-2010-5139
University of Copenhagen · DKNorwegian University of Science and Technology · NOUniversity of British Columbia · CACharles Darwin Foundation · ECUniversity of California, Davis · USUniversity of Illinois Urbana-Champaign · USUniversity of Oslo · NOFort Lewis College · USReal Jardín Botánico · ESStockholm University · SEUniversidad Autónoma de Madrid · ESUniversity of Coimbra · PTUniversity of East Anglia · GBUniversity of Georgia · USUniversity of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The repeated, rapid and often pronounced patterns of evolutionary divergence observed in insular plants, or the 'plant island syndrome', include changes in leaf phenotypes, growth, as well as the acquisition of a perennial lifestyle. Here, we sequence and describe the genome of the critically endangered, Galápagos-endemic species Scalesia atractyloides Arnot., obtaining a chromosome-resolved, 3.2-Gbp assembly containing 43,093 candidate gene models. Using a combination of fossil transposable elements, k-mer spectra analyses and orthologue assignment, we identify the two ancestral genomes, and date their divergence and the polyploidization event, concluding that the ancestor of all extant Scalesia species was an allotetraploid. There are a comparable number of genes and transposable elements across the two subgenomes, and while their synteny has been mostly conserved, we find multiple inversions that may have facilitated adaptation. We identify clear signatures of selection across genes associated with vascular development, growth, adaptation to salinity and flowering time, thus finding compelling evidence for a genomic basis of the island syndrome in one of Darwin's giant daisies.

Indexed as

DNA Transposable ElementsGenomicsBiological EvolutionSyntenyDNA Transposable Elements

Identifiers

PMID35764640
PMCPMC9240058
OpenAlexW4283700928

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.