Evidence map›Paper›PMID 35764627›Full record

ArticleNature communications2022

Lsm7 phase-separated condensates trigger stress granule formation.

Michelle Lindström, Lihua Chen, Shan Jiang, Dan Zhang, Yuan Gao, Ju Zheng, Xinxin Hao, Xiaoxue Yang, Arpitha Kabbinale, Johannes Thoma and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Michelle Lindström *Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Lihua Chen *Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden. chen_lihua@gzlab.ac.cn.ORCID http://orcid.org/0000-0003-3369-1875
Shan JiangDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-1540-8506
Dan ZhangDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Yuan GaoDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Ju ZhengFunctional Biology, KU Leuven, Leuven, Belgium.
Xinxin HaoDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-5758-6290
Xiaoxue YangDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Arpitha KabbinaleDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Johannes ThomaDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0003-3584-8274
Lisa C MetzgerDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-7398-0941
Deyuan Y ZhangCollege of Artificial Intelligence, Shenyang Aerospace University, Shenbei New District, Shenyang, Liaoning, China.ORCID http://orcid.org/0000-0003-2542-9834
Xuefeng ZhuDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden.
Huisheng LiuGuangzhou Laboratory, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0001-5371-7943
Claes M GustafssonDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0003-3531-8468
Björn M BurmannDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-3135-7964
Joris WinderickxFunctional Biology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0003-3133-7733
Per SunnerhagenDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-0967-8729
Beidong LiuDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden. beidong.liu@cmb.gu.se.ORCID http://orcid.org/0000-0001-6052-8411

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stress granules (SGs) are non-membranous organelles facilitating stress responses and linking the pathology of age-related diseases. In a genome-wide imaging-based phenomic screen, we identify Pab1 co-localizing proteins under 2-deoxy-D-glucose (2-DG) induced stress in Saccharomyces cerevisiae. We find that deletion of one of the Pab1 co-localizing proteins, Lsm7, leads to a significant decrease in SG formation. Under 2-DG stress, Lsm7 rapidly forms foci that assist in SG formation. The Lsm7 foci form via liquid-liquid phase separation, and the intrinsically disordered region and the hydrophobic clusters within the Lsm7 sequence are the internal driving forces in promoting Lsm7 phase separation. The dynamic Lsm7 phase-separated condensates appear to work as seeding scaffolds, promoting Pab1 demixing and subsequent SG initiation, seemingly mediated by RNA interactions. The SG initiation mechanism, via Lsm7 phase separation, identified in this work provides valuable clues for understanding the mechanisms underlying SG formation and SG-associated human diseases.

Indexed as

Biochemical PhenomenaSaccharomyces cerevisiae ProteinsCytoplasmic GranulesHumansPoly(A)-Binding ProteinsSaccharomyces cerevisiaeStress Granulespab1 protein, S cerevisiaePoly(A)-Binding ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID35764627
PMCPMC9240020

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.