Evidence map›Paper›PMID 35762722›Full record

ArticleProtein science : a publication of the Protein Society2022

Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase.

Mashael A Alghamdi, Rania A Hussien, Yuanzhang Zheng, Hiral P Patel, Matías D Asencion Diez, Alberto A Iglesias, Dali Liu, Miguel A Ballicora

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Mashael A AlghamdiDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.
Rania A HussienDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.
Yuanzhang ZhengDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.
Hiral P PatelDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.
Matías D Asencion DiezDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.
Alberto A IglesiasInstituto de Agrobiotecnología del Litoral (UNL-CONICET), FBCB Paraje "El Pozo", CCT-Santa Fe, Santa Fe, Argentina.
Dali LiuDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.ORCID 0000-0002-7587-703X
Miguel A BallicoraDepartment of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois.ORCID 0000-0002-5324-0724
Loyola University Chicago · USInstituto de Agrobiotecnología del Litoral · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The allosteric regulation of ADP-glucose pyrophosphorylase is critical for the biosynthesis of glycogen in bacteria and starch in plants. The enzyme from Agrobacterium tumefaciens is activated by fructose 6-phosphate (Fru6P) and pyruvate (Pyr). The Pyr site has been recently found, but the site where Fru6P binds has remained unknown. We hypothesize that a sulfate ion previously found in the crystal structure reveals a part of the regulatory site mimicking the presence of the phosphoryl moiety of the activator Fru6P. Ser72 interacts with this sulfate ion and, if the hypothesis is correct, Ser72 would affect the interaction with Fru6P and activation of the enzyme. Here, we report structural, binding, and kinetic analysis of Ser72 mutants of the A. tumefaciens ADP-glucose pyrophosphorylase. By X-ray crystallography, we found that when Ser72 was replaced by Asp or Glu side chain carboxylates protruded into the sulfate-binding pocket. They would present a strong steric and electrostatic hindrance to the phosphoryl moiety of Fru6P, while being remote from the Pyr site. In agreement, we found that Fru6P could not activate or bind to S72E or S72D mutants, whereas Pyr was still an effective activator. These mutants also blocked the binding of the inhibitor AMP. This could potentially have biotechnological importance in obtaining enzyme forms insensitive to inhibition. Other mutations in this position (Ala, Cys, and Trp) confirmed the importance of Ser72 in regulation. We propose that the ADP-glucose pyrophosphorylase from A. tumefaciens have two distinct sites for Fru6P and Pyr working in tandem to regulate glycogen biosynthesis.

Indexed as

Agrobacterium tumefaciensSerineFructoseGlucose-1-Phosphate AdenylyltransferaseGlycogenKineticsMutagenesis, Site-DirectedPhosphatesSulfatesFructoseGlucose-1-Phosphate AdenylyltransferaseGlycogenPhosphatesSerineSulfatesADP-glucose pyrophosphorylaseallosteric regulationenzyme engineeringglycogen biosynthesis

Identifiers

PMID35762722
PMCPMC9234290
OpenAlexW4283589365

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.